Gene : AT5G18180 A. thaliana TAIR10
Defline:  (1 of 2) K11128 - H/ACA ribonucleoprotein complex subunit 1 (GAR1, NOLA1) Genomic Order:  1732
Name:  ? AT5G18180 Secondary Identifier:  ? PAC:19666495
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G18180 0.5kb upstream 0.5kb upstream 1545 true Chr5: 6008561-6010105 Arabidopsis thaliana
AT5G18180 0.5kb upstream 0.5kb upstream 500 false Chr5: 6009606-6010105 Arabidopsis thaliana
AT5G18180 0.5kb downstream 0.5kb downstream 1545 true Chr5: 6008061-6009605 Arabidopsis thaliana
AT5G18180 0.5kb downstream 0.5kb downstream 500 false Chr5: 6008061-6008560 Arabidopsis thaliana
AT5G18180 1.0kb upstream 1.0kb upstream 2045 true Chr5: 6008561-6010605 Arabidopsis thaliana
AT5G18180 1.0kb upstream 1.0kb upstream 1000 false Chr5: 6009606-6010605 Arabidopsis thaliana
AT5G18180 1.0kb downstream 1.0kb downstream 2045 true Chr5: 6007561-6009605 Arabidopsis thaliana
AT5G18180 1.0kb downstream 1.0kb downstream 1000 false Chr5: 6007561-6008560 Arabidopsis thaliana
AT5G18180 2.0kb upstream 2.0kb upstream 3045 true Chr5: 6008561-6011605 Arabidopsis thaliana
AT5G18180 2.0kb upstream 2.0kb upstream 2000 false Chr5: 6009606-6011605 Arabidopsis thaliana
AT5G18180 2.0kb downstream 2.0kb downstream 3045 true Chr5: 6006561-6009605 Arabidopsis thaliana
AT5G18180 2.0kb downstream 2.0kb downstream 2000 false Chr5: 6006561-6008560 Arabidopsis thaliana
AT5G18180 5.0kb upstream 5.0kb upstream 6045 true Chr5: 6008561-6014605 Arabidopsis thaliana
AT5G18180 5.0kb upstream 5.0kb upstream 5000 false Chr5: 6009606-6014605 Arabidopsis thaliana
AT5G18180 5.0kb downstream 5.0kb downstream 6045 true Chr5: 6003561-6009605 Arabidopsis thaliana
AT5G18180 5.0kb downstream 5.0kb downstream 5000 false Chr5: 6003561-6008560 Arabidopsis thaliana
AT5G18180 10.0kb upstream 10.0kb upstream 11045 true Chr5: 6008561-6019605 Arabidopsis thaliana
AT5G18180 10.0kb upstream 10.0kb upstream 10000 false Chr5: 6009606-6019605 Arabidopsis thaliana
AT5G18180 10.0kb downstream 10.0kb downstream 11045 true Chr5: 5998561-6009605 Arabidopsis thaliana
AT5G18180 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5998561-6008560 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338378 5261 Brassicaceae View MSA
123837911 5264 Brassicales-Malvales View MSA
124322373 5266 SBM View MSA
124238669 5268 Malvidae View MSA
124060863 5270 Rosid View MSA
123746440 5271 Pentapetalae View MSA
122789002 5272 Eudicot View MSA
122045887 5273 Angiosperm View MSA
121346687 5274 Embryophyte View MSA
123425060 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.692        
cufflinks 0.988       High
cufflinks 0.47       Low
cufflinks 0.719        
cufflinks 0.476       Low
cufflinks 0.979       High

0 Strain