Gene : AT5G16040 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22870//PTHR22870:SF206 - REGULATOR OF CHROMOSOME CONDENSATION // SUBFAMILY NOT NAMED Genomic Order:  1505
Name:  ? AT5G16040 Secondary Identifier:  ? PAC:19670601
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G16040 0.5kb upstream 0.5kb upstream 3155 true Chr5: 5240675-5243829 Arabidopsis thaliana
AT5G16040 0.5kb upstream 0.5kb upstream 500 false Chr5: 5243330-5243829 Arabidopsis thaliana
AT5G16040 0.5kb downstream 0.5kb downstream 3155 true Chr5: 5240175-5243329 Arabidopsis thaliana
AT5G16040 0.5kb downstream 0.5kb downstream 500 false Chr5: 5240175-5240674 Arabidopsis thaliana
AT5G16040 1.0kb upstream 1.0kb upstream 3655 true Chr5: 5240675-5244329 Arabidopsis thaliana
AT5G16040 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5243330-5244329 Arabidopsis thaliana
AT5G16040 1.0kb downstream 1.0kb downstream 3655 true Chr5: 5239675-5243329 Arabidopsis thaliana
AT5G16040 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5239675-5240674 Arabidopsis thaliana
AT5G16040 2.0kb upstream 2.0kb upstream 4655 true Chr5: 5240675-5245329 Arabidopsis thaliana
AT5G16040 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5243330-5245329 Arabidopsis thaliana
AT5G16040 2.0kb downstream 2.0kb downstream 4655 true Chr5: 5238675-5243329 Arabidopsis thaliana
AT5G16040 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5238675-5240674 Arabidopsis thaliana
AT5G16040 5.0kb upstream 5.0kb upstream 7655 true Chr5: 5240675-5248329 Arabidopsis thaliana
AT5G16040 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5243330-5248329 Arabidopsis thaliana
AT5G16040 5.0kb downstream 5.0kb downstream 7655 true Chr5: 5235675-5243329 Arabidopsis thaliana
AT5G16040 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5235675-5240674 Arabidopsis thaliana
AT5G16040 10.0kb upstream 10.0kb upstream 12655 true Chr5: 5240675-5253329 Arabidopsis thaliana
AT5G16040 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5243330-5253329 Arabidopsis thaliana
AT5G16040 10.0kb downstream 10.0kb downstream 12655 true Chr5: 5230675-5243329 Arabidopsis thaliana
AT5G16040 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5230675-5240674 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374920 5261 Brassicaceae View MSA
123835617 5264 Brassicales-Malvales View MSA
124346324 5266 SBM View MSA
124242010 5268 Malvidae View MSA
124064985 5270 Rosid View MSA
123740623 5271 Pentapetalae View MSA
122785956 5272 Eudicot View MSA
122042833 5273 Angiosperm View MSA
121348497 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.896        
cufflinks 18.19        
cufflinks 6.871        
cufflinks 19.846       High
cufflinks 5.897        
cufflinks 15.993        

0 Strain