Gene : AT5G15790 A. thaliana TAIR10
Defline:  (1 of 3) PTHR22763//PTHR22763:SF34 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1477
Name:  ? AT5G15790 Secondary Identifier:  ? PAC:19667044
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G15790 0.5kb upstream 0.5kb upstream 3190 true Chr5: 5148244-5151433 Arabidopsis thaliana
AT5G15790 0.5kb upstream 0.5kb upstream 500 false Chr5: 5148244-5148743 Arabidopsis thaliana
AT5G15790 0.5kb downstream 0.5kb downstream 3190 true Chr5: 5148744-5151933 Arabidopsis thaliana
AT5G15790 0.5kb downstream 0.5kb downstream 500 false Chr5: 5151434-5151933 Arabidopsis thaliana
AT5G15790 1.0kb upstream 1.0kb upstream 3690 true Chr5: 5147744-5151433 Arabidopsis thaliana
AT5G15790 1.0kb upstream 1.0kb upstream 1000 false Chr5: 5147744-5148743 Arabidopsis thaliana
AT5G15790 1.0kb downstream 1.0kb downstream 3690 true Chr5: 5148744-5152433 Arabidopsis thaliana
AT5G15790 1.0kb downstream 1.0kb downstream 1000 false Chr5: 5151434-5152433 Arabidopsis thaliana
AT5G15790 2.0kb upstream 2.0kb upstream 4690 true Chr5: 5146744-5151433 Arabidopsis thaliana
AT5G15790 2.0kb upstream 2.0kb upstream 2000 false Chr5: 5146744-5148743 Arabidopsis thaliana
AT5G15790 2.0kb downstream 2.0kb downstream 4690 true Chr5: 5148744-5153433 Arabidopsis thaliana
AT5G15790 2.0kb downstream 2.0kb downstream 2000 false Chr5: 5151434-5153433 Arabidopsis thaliana
AT5G15790 5.0kb upstream 5.0kb upstream 7690 true Chr5: 5143744-5151433 Arabidopsis thaliana
AT5G15790 5.0kb upstream 5.0kb upstream 5000 false Chr5: 5143744-5148743 Arabidopsis thaliana
AT5G15790 5.0kb downstream 5.0kb downstream 7690 true Chr5: 5148744-5156433 Arabidopsis thaliana
AT5G15790 5.0kb downstream 5.0kb downstream 5000 false Chr5: 5151434-5156433 Arabidopsis thaliana
AT5G15790 10.0kb upstream 10.0kb upstream 12690 true Chr5: 5138744-5151433 Arabidopsis thaliana
AT5G15790 10.0kb upstream 10.0kb upstream 10000 false Chr5: 5138744-5148743 Arabidopsis thaliana
AT5G15790 10.0kb downstream 10.0kb downstream 12690 true Chr5: 5148744-5161433 Arabidopsis thaliana
AT5G15790 10.0kb downstream 10.0kb downstream 10000 false Chr5: 5151434-5161433 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362091 5261 Brassicaceae View MSA
123838764 5264 Brassicales-Malvales View MSA
124340119 5266 SBM View MSA
124251638 5268 Malvidae View MSA
124064402 5270 Rosid View MSA
123745237 5271 Pentapetalae View MSA
122788108 5272 Eudicot View MSA
122046518 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121345645 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.401        
cufflinks 2.826        
cufflinks 1.624        
cufflinks 3.085       High
cufflinks 1.111       Low
cufflinks 2.835        

0 Strain