Gene : AT5G13940 A. thaliana TAIR10
Defline:  (1 of 3) PF12576 - Protein of unknown function (DUF3754) (DUF3754) Genomic Order:  1289
Name:  ? AT5G13940 Secondary Identifier:  ? PAC:19668063
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G13940 0.5kb upstream 0.5kb upstream 5823 true Chr5: 4490263-4496085 Arabidopsis thaliana
AT5G13940 0.5kb upstream 0.5kb upstream 500 false Chr5: 4495586-4496085 Arabidopsis thaliana
AT5G13940 0.5kb downstream 0.5kb downstream 5823 true Chr5: 4489763-4495585 Arabidopsis thaliana
AT5G13940 0.5kb downstream 0.5kb downstream 500 false Chr5: 4489763-4490262 Arabidopsis thaliana
AT5G13940 1.0kb upstream 1.0kb upstream 6323 true Chr5: 4490263-4496585 Arabidopsis thaliana
AT5G13940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 4495586-4496585 Arabidopsis thaliana
AT5G13940 1.0kb downstream 1.0kb downstream 6323 true Chr5: 4489263-4495585 Arabidopsis thaliana
AT5G13940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 4489263-4490262 Arabidopsis thaliana
AT5G13940 2.0kb upstream 2.0kb upstream 7323 true Chr5: 4490263-4497585 Arabidopsis thaliana
AT5G13940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 4495586-4497585 Arabidopsis thaliana
AT5G13940 2.0kb downstream 2.0kb downstream 7323 true Chr5: 4488263-4495585 Arabidopsis thaliana
AT5G13940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 4488263-4490262 Arabidopsis thaliana
AT5G13940 5.0kb upstream 5.0kb upstream 10323 true Chr5: 4490263-4500585 Arabidopsis thaliana
AT5G13940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 4495586-4500585 Arabidopsis thaliana
AT5G13940 5.0kb downstream 5.0kb downstream 10323 true Chr5: 4485263-4495585 Arabidopsis thaliana
AT5G13940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 4485263-4490262 Arabidopsis thaliana
AT5G13940 10.0kb upstream 10.0kb upstream 15323 true Chr5: 4490263-4505585 Arabidopsis thaliana
AT5G13940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 4495586-4505585 Arabidopsis thaliana
AT5G13940 10.0kb downstream 10.0kb downstream 15323 true Chr5: 4480263-4495585 Arabidopsis thaliana
AT5G13940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 4480263-4490262 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121495178 5273 Angiosperm Singleton cluster - no MSA
122331100 5261 Brassicaceae Singleton cluster - no MSA
123772306 5264 Brassicales-Malvales Singleton cluster - no MSA
124270825 5266 SBM Singleton cluster - no MSA
124126875 5268 Malvidae Singleton cluster - no MSA
123855759 5270 Rosid Singleton cluster - no MSA
123441725 5271 Pentapetalae Singleton cluster - no MSA
122477308 5272 Eudicot Singleton cluster - no MSA
120768545 5274 Embryophyte Singleton cluster - no MSA
123428488 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low Low

0 Strain