Gene : AT5G11560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR21573:SF0 - ER MEMBRANE PROTEIN COMPLEX SUBUNIT 1 Genomic Order:  1082
Name:  ? AT5G11560 Secondary Identifier:  ? PAC:19667359
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G11560 0.5kb upstream 0.5kb upstream 5079 true Chr5: 3709481-3714559 Arabidopsis thaliana
AT5G11560 0.5kb upstream 0.5kb upstream 500 false Chr5: 3714060-3714559 Arabidopsis thaliana
AT5G11560 0.5kb downstream 0.5kb downstream 5079 true Chr5: 3708981-3714059 Arabidopsis thaliana
AT5G11560 0.5kb downstream 0.5kb downstream 500 false Chr5: 3708981-3709480 Arabidopsis thaliana
AT5G11560 1.0kb upstream 1.0kb upstream 5579 true Chr5: 3709481-3715059 Arabidopsis thaliana
AT5G11560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3714060-3715059 Arabidopsis thaliana
AT5G11560 1.0kb downstream 1.0kb downstream 5579 true Chr5: 3708481-3714059 Arabidopsis thaliana
AT5G11560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3708481-3709480 Arabidopsis thaliana
AT5G11560 2.0kb upstream 2.0kb upstream 6579 true Chr5: 3709481-3716059 Arabidopsis thaliana
AT5G11560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3714060-3716059 Arabidopsis thaliana
AT5G11560 2.0kb downstream 2.0kb downstream 6579 true Chr5: 3707481-3714059 Arabidopsis thaliana
AT5G11560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3707481-3709480 Arabidopsis thaliana
AT5G11560 5.0kb upstream 5.0kb upstream 9579 true Chr5: 3709481-3719059 Arabidopsis thaliana
AT5G11560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3714060-3719059 Arabidopsis thaliana
AT5G11560 5.0kb downstream 5.0kb downstream 9579 true Chr5: 3704481-3714059 Arabidopsis thaliana
AT5G11560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3704481-3709480 Arabidopsis thaliana
AT5G11560 10.0kb upstream 10.0kb upstream 14579 true Chr5: 3709481-3724059 Arabidopsis thaliana
AT5G11560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3714060-3724059 Arabidopsis thaliana
AT5G11560 10.0kb downstream 10.0kb downstream 14579 true Chr5: 3699481-3714059 Arabidopsis thaliana
AT5G11560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3699481-3709480 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365276 5261 Brassicaceae View MSA
123830226 5264 Brassicales-Malvales View MSA
124337395 5266 SBM View MSA
124240617 5268 Malvidae View MSA
124063499 5270 Rosid View MSA
123736612 5271 Pentapetalae View MSA
122785753 5272 Eudicot View MSA
122044335 5273 Angiosperm View MSA
121345434 5274 Embryophyte View MSA
123428246 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.053     High  
cufflinks 42.281     High  
cufflinks 25.012       Low
cufflinks 49.45     High  
cufflinks 25.192       Low
cufflinks 52.823     High High

0 Strain