Gene : MSL10 A. thaliana TAIR10
Primary Identifier:  ? AT5G12080 Defline:  (1 of 2) PTHR31618:SF3 - MECHANOSENSITIVE ION CHANNEL PROTEIN 10-RELATED
Genomic Order:  1135 Name:  ? AT5G12080
Secondary Identifier:  ? PAC:19673278
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G12080 0.5kb upstream 0.5kb upstream 4178 true Chr5: 3898047-3902224 Arabidopsis thaliana
AT5G12080 0.5kb upstream 0.5kb upstream 500 false Chr5: 3901725-3902224 Arabidopsis thaliana
AT5G12080 0.5kb downstream 0.5kb downstream 4178 true Chr5: 3897547-3901724 Arabidopsis thaliana
AT5G12080 0.5kb downstream 0.5kb downstream 500 false Chr5: 3897547-3898046 Arabidopsis thaliana
AT5G12080 1.0kb upstream 1.0kb upstream 4678 true Chr5: 3898047-3902724 Arabidopsis thaliana
AT5G12080 1.0kb upstream 1.0kb upstream 1000 false Chr5: 3901725-3902724 Arabidopsis thaliana
AT5G12080 1.0kb downstream 1.0kb downstream 4678 true Chr5: 3897047-3901724 Arabidopsis thaliana
AT5G12080 1.0kb downstream 1.0kb downstream 1000 false Chr5: 3897047-3898046 Arabidopsis thaliana
AT5G12080 2.0kb upstream 2.0kb upstream 5678 true Chr5: 3898047-3903724 Arabidopsis thaliana
AT5G12080 2.0kb upstream 2.0kb upstream 2000 false Chr5: 3901725-3903724 Arabidopsis thaliana
AT5G12080 2.0kb downstream 2.0kb downstream 5678 true Chr5: 3896047-3901724 Arabidopsis thaliana
AT5G12080 2.0kb downstream 2.0kb downstream 2000 false Chr5: 3896047-3898046 Arabidopsis thaliana
AT5G12080 5.0kb upstream 5.0kb upstream 8678 true Chr5: 3898047-3906724 Arabidopsis thaliana
AT5G12080 5.0kb upstream 5.0kb upstream 5000 false Chr5: 3901725-3906724 Arabidopsis thaliana
AT5G12080 5.0kb downstream 5.0kb downstream 8678 true Chr5: 3893047-3901724 Arabidopsis thaliana
AT5G12080 5.0kb downstream 5.0kb downstream 5000 false Chr5: 3893047-3898046 Arabidopsis thaliana
AT5G12080 10.0kb upstream 10.0kb upstream 13678 true Chr5: 3898047-3911724 Arabidopsis thaliana
AT5G12080 10.0kb upstream 10.0kb upstream 10000 false Chr5: 3901725-3911724 Arabidopsis thaliana
AT5G12080 10.0kb downstream 10.0kb downstream 13678 true Chr5: 3888047-3901724 Arabidopsis thaliana
AT5G12080 10.0kb downstream 10.0kb downstream 10000 false Chr5: 3888047-3898046 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041489 5273 Angiosperm View MSA
122362114 5261 Brassicaceae View MSA
123827538 5264 Brassicales-Malvales View MSA
124349252 5266 SBM View MSA
124238536 5268 Malvidae View MSA
124069655 5270 Rosid View MSA
123753249 5271 Pentapetalae View MSA
122794299 5272 Eudicot View MSA
121309858 5274 Embryophyte View MSA
123428857 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.023        
cufflinks 3.011        
cufflinks 1.319       Low
cufflinks 4.177       High
cufflinks 1.305       Low
cufflinks 3.398        

0 Strain