Gene : SCPL19 A. thaliana TAIR10
Primary Identifier:  ? AT5G09640 Defline:  (1 of 1) 2.3.1.91 - Sinapoylglucose--choline O-sinapoyltransferase / Sinapine synthase
Genomic Order:  876 Name:  ? AT5G09640
Secondary Identifier:  ? PAC:19672076
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3301 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G09640 0.5kb upstream 0.5kb upstream 3343 true Chr5: 2987814-2991156 Arabidopsis thaliana
AT5G09640 0.5kb upstream 0.5kb upstream 500 false Chr5: 2987814-2988313 Arabidopsis thaliana
AT5G09640 0.5kb downstream 0.5kb downstream 3343 true Chr5: 2988314-2991656 Arabidopsis thaliana
AT5G09640 0.5kb downstream 0.5kb downstream 500 false Chr5: 2991157-2991656 Arabidopsis thaliana
AT5G09640 1.0kb upstream 1.0kb upstream 3843 true Chr5: 2987314-2991156 Arabidopsis thaliana
AT5G09640 1.0kb upstream 1.0kb upstream 1000 false Chr5: 2987314-2988313 Arabidopsis thaliana
AT5G09640 1.0kb downstream 1.0kb downstream 3843 true Chr5: 2988314-2992156 Arabidopsis thaliana
AT5G09640 1.0kb downstream 1.0kb downstream 1000 false Chr5: 2991157-2992156 Arabidopsis thaliana
AT5G09640 2.0kb upstream 2.0kb upstream 4843 true Chr5: 2986314-2991156 Arabidopsis thaliana
AT5G09640 2.0kb upstream 2.0kb upstream 2000 false Chr5: 2986314-2988313 Arabidopsis thaliana
AT5G09640 2.0kb downstream 2.0kb downstream 4843 true Chr5: 2988314-2993156 Arabidopsis thaliana
AT5G09640 2.0kb downstream 2.0kb downstream 2000 false Chr5: 2991157-2993156 Arabidopsis thaliana
AT5G09640 5.0kb upstream 5.0kb upstream 7843 true Chr5: 2983314-2991156 Arabidopsis thaliana
AT5G09640 5.0kb upstream 5.0kb upstream 5000 false Chr5: 2983314-2988313 Arabidopsis thaliana
AT5G09640 5.0kb downstream 5.0kb downstream 7843 true Chr5: 2988314-2996156 Arabidopsis thaliana
AT5G09640 5.0kb downstream 5.0kb downstream 5000 false Chr5: 2991157-2996156 Arabidopsis thaliana
AT5G09640 10.0kb upstream 10.0kb upstream 12843 true Chr5: 2978314-2991156 Arabidopsis thaliana
AT5G09640 10.0kb upstream 10.0kb upstream 10000 false Chr5: 2978314-2988313 Arabidopsis thaliana
AT5G09640 10.0kb downstream 10.0kb downstream 12843 true Chr5: 2988314-3001156 Arabidopsis thaliana
AT5G09640 10.0kb downstream 10.0kb downstream 10000 false Chr5: 2991157-3001156 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361550 5261 Brassicaceae View MSA
123841552 5264 Brassicales-Malvales View MSA
124347801 5266 SBM View MSA
124254219 5268 Malvidae View MSA
124073941 5270 Rosid View MSA
123747460 5271 Pentapetalae View MSA
122796815 5272 Eudicot View MSA
122050629 5273 Angiosperm View MSA
121312037 5274 Embryophyte View MSA
123349249 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.005     Low Low
cufflinks 1.35        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.87        
cufflinks 0.011     Low  
cufflinks 0.692        

0 Strain