Gene : VPS28-1 A. thaliana TAIR10
Primary Identifier:  ? AT4G21560 Defline:  (1 of 2) K12184 - ESCRT-I complex subunit VPS28 (VPS28)
Genomic Order:  2111 Name:  ? AT4G21560
Secondary Identifier:  ? PAC:19644654
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G21560 0.5kb upstream 0.5kb upstream 2273 true Chr4: 11468761-11471033 Arabidopsis thaliana
AT4G21560 0.5kb upstream 0.5kb upstream 500 false Chr4: 11470534-11471033 Arabidopsis thaliana
AT4G21560 0.5kb downstream 0.5kb downstream 2273 true Chr4: 11468261-11470533 Arabidopsis thaliana
AT4G21560 0.5kb downstream 0.5kb downstream 500 false Chr4: 11468261-11468760 Arabidopsis thaliana
AT4G21560 1.0kb upstream 1.0kb upstream 2773 true Chr4: 11468761-11471533 Arabidopsis thaliana
AT4G21560 1.0kb upstream 1.0kb upstream 1000 false Chr4: 11470534-11471533 Arabidopsis thaliana
AT4G21560 1.0kb downstream 1.0kb downstream 2773 true Chr4: 11467761-11470533 Arabidopsis thaliana
AT4G21560 1.0kb downstream 1.0kb downstream 1000 false Chr4: 11467761-11468760 Arabidopsis thaliana
AT4G21560 2.0kb upstream 2.0kb upstream 3773 true Chr4: 11468761-11472533 Arabidopsis thaliana
AT4G21560 2.0kb upstream 2.0kb upstream 2000 false Chr4: 11470534-11472533 Arabidopsis thaliana
AT4G21560 2.0kb downstream 2.0kb downstream 3773 true Chr4: 11466761-11470533 Arabidopsis thaliana
AT4G21560 2.0kb downstream 2.0kb downstream 2000 false Chr4: 11466761-11468760 Arabidopsis thaliana
AT4G21560 5.0kb upstream 5.0kb upstream 6773 true Chr4: 11468761-11475533 Arabidopsis thaliana
AT4G21560 5.0kb upstream 5.0kb upstream 5000 false Chr4: 11470534-11475533 Arabidopsis thaliana
AT4G21560 5.0kb downstream 5.0kb downstream 6773 true Chr4: 11463761-11470533 Arabidopsis thaliana
AT4G21560 5.0kb downstream 5.0kb downstream 5000 false Chr4: 11463761-11468760 Arabidopsis thaliana
AT4G21560 10.0kb upstream 10.0kb upstream 11773 true Chr4: 11468761-11480533 Arabidopsis thaliana
AT4G21560 10.0kb upstream 10.0kb upstream 10000 false Chr4: 11470534-11480533 Arabidopsis thaliana
AT4G21560 10.0kb downstream 10.0kb downstream 11773 true Chr4: 11458761-11470533 Arabidopsis thaliana
AT4G21560 10.0kb downstream 10.0kb downstream 10000 false Chr4: 11458761-11468760 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370172 5261 Brassicaceae View MSA
123838462 5264 Brassicales-Malvales View MSA
124341330 5266 SBM View MSA
124244249 5268 Malvidae View MSA
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.384        
cufflinks 11.75       High
cufflinks 5.535       Low
cufflinks 9.879        
cufflinks 6.032        
cufflinks 10.126        

0 Strain