Gene : AT4G15720 A. thaliana TAIR10
Defline:  (1 of 61) PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase) Genomic Order:  1464
Name:  ? AT4G15720 Secondary Identifier:  ? PAC:19645684
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G15720 0.5kb upstream 0.5kb upstream 2581 true Chr4: 8948960-8951540 Arabidopsis thaliana
AT4G15720 0.5kb upstream 0.5kb upstream 500 false Chr4: 8948960-8949459 Arabidopsis thaliana
AT4G15720 0.5kb downstream 0.5kb downstream 2581 true Chr4: 8949460-8952040 Arabidopsis thaliana
AT4G15720 0.5kb downstream 0.5kb downstream 500 false Chr4: 8951541-8952040 Arabidopsis thaliana
AT4G15720 1.0kb upstream 1.0kb upstream 3081 true Chr4: 8948460-8951540 Arabidopsis thaliana
AT4G15720 1.0kb upstream 1.0kb upstream 1000 false Chr4: 8948460-8949459 Arabidopsis thaliana
AT4G15720 1.0kb downstream 1.0kb downstream 3081 true Chr4: 8949460-8952540 Arabidopsis thaliana
AT4G15720 1.0kb downstream 1.0kb downstream 1000 false Chr4: 8951541-8952540 Arabidopsis thaliana
AT4G15720 2.0kb upstream 2.0kb upstream 4081 true Chr4: 8947460-8951540 Arabidopsis thaliana
AT4G15720 2.0kb upstream 2.0kb upstream 2000 false Chr4: 8947460-8949459 Arabidopsis thaliana
AT4G15720 2.0kb downstream 2.0kb downstream 4081 true Chr4: 8949460-8953540 Arabidopsis thaliana
AT4G15720 2.0kb downstream 2.0kb downstream 2000 false Chr4: 8951541-8953540 Arabidopsis thaliana
AT4G15720 5.0kb upstream 5.0kb upstream 7081 true Chr4: 8944460-8951540 Arabidopsis thaliana
AT4G15720 5.0kb upstream 5.0kb upstream 5000 false Chr4: 8944460-8949459 Arabidopsis thaliana
AT4G15720 5.0kb downstream 5.0kb downstream 7081 true Chr4: 8949460-8956540 Arabidopsis thaliana
AT4G15720 5.0kb downstream 5.0kb downstream 5000 false Chr4: 8951541-8956540 Arabidopsis thaliana
AT4G15720 10.0kb upstream 10.0kb upstream 12081 true Chr4: 8939460-8951540 Arabidopsis thaliana
AT4G15720 10.0kb upstream 10.0kb upstream 10000 false Chr4: 8939460-8949459 Arabidopsis thaliana
AT4G15720 10.0kb downstream 10.0kb downstream 12081 true Chr4: 8949460-8961540 Arabidopsis thaliana
AT4G15720 10.0kb downstream 10.0kb downstream 10000 false Chr4: 8951541-8961540 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122338340 5261 Brassicaceae View MSA
123829899 5264 Brassicales-Malvales View MSA
124343234 5266 SBM View MSA
124252420 5268 Malvidae View MSA
124072779 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.505       High
cufflinks 0.211     Low  
cufflinks 0.232     Low  
cufflinks 0.474       High
cufflinks 0.27        
cufflinks 0.257     Low  

0 Strain