Gene : AMSH3 A. thaliana TAIR10
Primary Identifier:  ? AT4G16144 Defline:  (1 of 1) PTHR12947//PTHR12947:SF4 - AMSH // REGULATOR OF FREE UBIQUITIN CHAINS 1
Genomic Order:  1520 Name:  ? AT4G16144
Secondary Identifier:  ? PAC:19645483
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G16144 0.5kb upstream 0.5kb upstream 4284 true Chr4: 9137789-9142072 Arabidopsis thaliana
AT4G16144 0.5kb upstream 0.5kb upstream 500 false Chr4: 9141573-9142072 Arabidopsis thaliana
AT4G16144 0.5kb downstream 0.5kb downstream 4284 true Chr4: 9137289-9141572 Arabidopsis thaliana
AT4G16144 0.5kb downstream 0.5kb downstream 500 false Chr4: 9137289-9137788 Arabidopsis thaliana
AT4G16144 1.0kb upstream 1.0kb upstream 4784 true Chr4: 9137789-9142572 Arabidopsis thaliana
AT4G16144 1.0kb upstream 1.0kb upstream 1000 false Chr4: 9141573-9142572 Arabidopsis thaliana
AT4G16144 1.0kb downstream 1.0kb downstream 4784 true Chr4: 9136789-9141572 Arabidopsis thaliana
AT4G16144 1.0kb downstream 1.0kb downstream 1000 false Chr4: 9136789-9137788 Arabidopsis thaliana
AT4G16144 2.0kb upstream 2.0kb upstream 5784 true Chr4: 9137789-9143572 Arabidopsis thaliana
AT4G16144 2.0kb upstream 2.0kb upstream 2000 false Chr4: 9141573-9143572 Arabidopsis thaliana
AT4G16144 2.0kb downstream 2.0kb downstream 5784 true Chr4: 9135789-9141572 Arabidopsis thaliana
AT4G16144 2.0kb downstream 2.0kb downstream 2000 false Chr4: 9135789-9137788 Arabidopsis thaliana
AT4G16144 5.0kb upstream 5.0kb upstream 8784 true Chr4: 9137789-9146572 Arabidopsis thaliana
AT4G16144 5.0kb upstream 5.0kb upstream 5000 false Chr4: 9141573-9146572 Arabidopsis thaliana
AT4G16144 5.0kb downstream 5.0kb downstream 8784 true Chr4: 9132789-9141572 Arabidopsis thaliana
AT4G16144 5.0kb downstream 5.0kb downstream 5000 false Chr4: 9132789-9137788 Arabidopsis thaliana
AT4G16144 10.0kb upstream 10.0kb upstream 13784 true Chr4: 9137789-9151572 Arabidopsis thaliana
AT4G16144 10.0kb upstream 10.0kb upstream 10000 false Chr4: 9141573-9151572 Arabidopsis thaliana
AT4G16144 10.0kb downstream 10.0kb downstream 13784 true Chr4: 9127789-9141572 Arabidopsis thaliana
AT4G16144 10.0kb downstream 10.0kb downstream 10000 false Chr4: 9127789-9137788 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365281 5261 Brassicaceae View MSA
123828764 5264 Brassicales-Malvales View MSA
124339683 5266 SBM View MSA
124253598 5268 Malvidae View MSA
124061741 5270 Rosid View MSA
123740701 5271 Pentapetalae View MSA
122792659 5272 Eudicot View MSA
122049356 5273 Angiosperm View MSA
121351478 5274 Embryophyte View MSA
123425499 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.017        
cufflinks 4.531        
cufflinks 4.024        
cufflinks 5.083       High
cufflinks 4.097        
cufflinks 4.841        

0 Strain