Gene : AT4G13100 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12183//PTHR12183:SF17 - UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1145
Name:  ? AT4G13100 Secondary Identifier:  ? PAC:19645358
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT4G13100 0.5kb upstream 0.5kb upstream 3100 true Chr4: 7636438-7639537 Arabidopsis thaliana
AT4G13100 0.5kb upstream 0.5kb upstream 500 false Chr4: 7639038-7639537 Arabidopsis thaliana
AT4G13100 0.5kb downstream 0.5kb downstream 3100 true Chr4: 7635938-7639037 Arabidopsis thaliana
AT4G13100 0.5kb downstream 0.5kb downstream 500 false Chr4: 7635938-7636437 Arabidopsis thaliana
AT4G13100 1.0kb upstream 1.0kb upstream 3600 true Chr4: 7636438-7640037 Arabidopsis thaliana
AT4G13100 1.0kb upstream 1.0kb upstream 1000 false Chr4: 7639038-7640037 Arabidopsis thaliana
AT4G13100 1.0kb downstream 1.0kb downstream 3600 true Chr4: 7635438-7639037 Arabidopsis thaliana
AT4G13100 1.0kb downstream 1.0kb downstream 1000 false Chr4: 7635438-7636437 Arabidopsis thaliana
AT4G13100 2.0kb upstream 2.0kb upstream 4600 true Chr4: 7636438-7641037 Arabidopsis thaliana
AT4G13100 2.0kb upstream 2.0kb upstream 2000 false Chr4: 7639038-7641037 Arabidopsis thaliana
AT4G13100 2.0kb downstream 2.0kb downstream 4600 true Chr4: 7634438-7639037 Arabidopsis thaliana
AT4G13100 2.0kb downstream 2.0kb downstream 2000 false Chr4: 7634438-7636437 Arabidopsis thaliana
AT4G13100 5.0kb upstream 5.0kb upstream 7600 true Chr4: 7636438-7644037 Arabidopsis thaliana
AT4G13100 5.0kb upstream 5.0kb upstream 5000 false Chr4: 7639038-7644037 Arabidopsis thaliana
AT4G13100 5.0kb downstream 5.0kb downstream 7600 true Chr4: 7631438-7639037 Arabidopsis thaliana
AT4G13100 5.0kb downstream 5.0kb downstream 5000 false Chr4: 7631438-7636437 Arabidopsis thaliana
AT4G13100 10.0kb upstream 10.0kb upstream 12600 true Chr4: 7636438-7649037 Arabidopsis thaliana
AT4G13100 10.0kb upstream 10.0kb upstream 10000 false Chr4: 7639038-7649037 Arabidopsis thaliana
AT4G13100 10.0kb downstream 10.0kb downstream 12600 true Chr4: 7626438-7639037 Arabidopsis thaliana
AT4G13100 10.0kb downstream 10.0kb downstream 10000 false Chr4: 7626438-7636437 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376247 5261 Brassicaceae View MSA
123801188 5264 Brassicales-Malvales View MSA
124298521 5266 SBM View MSA
124150146 5268 Malvidae View MSA
124069437 5270 Rosid View MSA
123751393 5271 Pentapetalae View MSA
122796019 5272 Eudicot View MSA
122045882 5273 Angiosperm View MSA
121310523 5274 Embryophyte View MSA
123347984 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.16        
cufflinks 2.484        
cufflinks 1.863        
cufflinks 2.469        
cufflinks 1.772       Low
cufflinks 2.993       High

0 Strain