Gene : UBQ5 A. thaliana TAIR10
Primary Identifier:  ? AT3G62250 Defline:  (1 of 3) K02977 - small subunit ribosomal protein S27Ae (RP-S27Ae, RPS27A)
Genomic Order:  5303 Name:  ? AT3G62250
Secondary Identifier:  ? PAC:19663487
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT3G62250 0.5kb upstream 0.5kb upstream 1204 true Chr3: 23036594-23037797 Arabidopsis thaliana
AT3G62250 0.5kb upstream 0.5kb upstream 500 false Chr3: 23036594-23037093 Arabidopsis thaliana
AT3G62250 0.5kb downstream 0.5kb downstream 1204 true Chr3: 23037094-23038297 Arabidopsis thaliana
AT3G62250 0.5kb downstream 0.5kb downstream 500 false Chr3: 23037798-23038297 Arabidopsis thaliana
AT3G62250 1.0kb upstream 1.0kb upstream 1704 true Chr3: 23036094-23037797 Arabidopsis thaliana
AT3G62250 1.0kb upstream 1.0kb upstream 1000 false Chr3: 23036094-23037093 Arabidopsis thaliana
AT3G62250 1.0kb downstream 1.0kb downstream 1704 true Chr3: 23037094-23038797 Arabidopsis thaliana
AT3G62250 1.0kb downstream 1.0kb downstream 1000 false Chr3: 23037798-23038797 Arabidopsis thaliana
AT3G62250 2.0kb upstream 2.0kb upstream 2704 true Chr3: 23035094-23037797 Arabidopsis thaliana
AT3G62250 2.0kb upstream 2.0kb upstream 2000 false Chr3: 23035094-23037093 Arabidopsis thaliana
AT3G62250 2.0kb downstream 2.0kb downstream 2704 true Chr3: 23037094-23039797 Arabidopsis thaliana
AT3G62250 2.0kb downstream 2.0kb downstream 2000 false Chr3: 23037798-23039797 Arabidopsis thaliana
AT3G62250 5.0kb upstream 5.0kb upstream 5704 true Chr3: 23032094-23037797 Arabidopsis thaliana
AT3G62250 5.0kb upstream 5.0kb upstream 5000 false Chr3: 23032094-23037093 Arabidopsis thaliana
AT3G62250 5.0kb downstream 5.0kb downstream 5704 true Chr3: 23037094-23042797 Arabidopsis thaliana
AT3G62250 5.0kb downstream 5.0kb downstream 5000 false Chr3: 23037798-23042797 Arabidopsis thaliana
AT3G62250 10.0kb upstream 10.0kb upstream 10704 true Chr3: 23027094-23037797 Arabidopsis thaliana
AT3G62250 10.0kb upstream 10.0kb upstream 10000 false Chr3: 23027094-23037093 Arabidopsis thaliana
AT3G62250 10.0kb downstream 10.0kb downstream 10704 true Chr3: 23037094-23047797 Arabidopsis thaliana
AT3G62250 10.0kb downstream 10.0kb downstream 10000 false Chr3: 23037798-23047797 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372595 5261 Brassicaceae View MSA
123837397 5264 Brassicales-Malvales View MSA
124350207 5266 SBM View MSA
124254445 5268 Malvidae View MSA
124071954 5270 Rosid View MSA
123736823 5271 Pentapetalae View MSA
122788692 5272 Eudicot View MSA
122045257 5273 Angiosperm View MSA
121350332 5274 Embryophyte View MSA
123424740 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 380.787     High  
cufflinks 493.139     High  
cufflinks 315.273     High  
cufflinks 485.02     High  
cufflinks 264.443     High Low
cufflinks 585.971     High High

0 Strain