Gene : Seita.9G580200 S. italica v2.2
Defline:  (1 of 1) PTHR13428 - INNER NUCLEAR MEMBRANE PROTEIN MAN1 LEM DOMAIN CONTAINING PROTEIN Genomic Order:  5802
Name:  ? Seita.9G580200 Secondary Identifier:  ? PAC:32691985
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G580200 0.5kb upstream 0.5kb upstream 3150 true scaffold_9: 58823902-58827051 Setaria italica
Seita.9G580200 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 58823902-58824401 Setaria italica
Seita.9G580200 0.5kb downstream 0.5kb downstream 3150 true scaffold_9: 58824402-58827551 Setaria italica
Seita.9G580200 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 58827052-58827551 Setaria italica
Seita.9G580200 1.0kb upstream 1.0kb upstream 3650 true scaffold_9: 58823402-58827051 Setaria italica
Seita.9G580200 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 58823402-58824401 Setaria italica
Seita.9G580200 1.0kb downstream 1.0kb downstream 3650 true scaffold_9: 58824402-58828051 Setaria italica
Seita.9G580200 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 58827052-58828051 Setaria italica
Seita.9G580200 2.0kb upstream 2.0kb upstream 4650 true scaffold_9: 58822402-58827051 Setaria italica
Seita.9G580200 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 58822402-58824401 Setaria italica
Seita.9G580200 2.0kb downstream 2.0kb downstream 4650 true scaffold_9: 58824402-58829051 Setaria italica
Seita.9G580200 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 58827052-58829051 Setaria italica
Seita.9G580200 5.0kb upstream 5.0kb upstream 7650 true scaffold_9: 58819402-58827051 Setaria italica
Seita.9G580200 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 58819402-58824401 Setaria italica
Seita.9G580200 5.0kb downstream 5.0kb downstream 7650 true scaffold_9: 58824402-58832051 Setaria italica
Seita.9G580200 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 58827052-58832051 Setaria italica
Seita.9G580200 10.0kb upstream 10.0kb upstream 12650 true scaffold_9: 58814402-58827051 Setaria italica
Seita.9G580200 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 58814402-58824401 Setaria italica
Seita.9G580200 10.0kb downstream 10.0kb downstream 12650 true scaffold_9: 58824402-58837051 Setaria italica
Seita.9G580200 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 58827052-58837051 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191849 5267 Panicoideae View MSA
124575474 5269 Grass View MSA
122043959 5273 Angiosperm View MSA
121347546 5274 Embryophyte View MSA
123380568 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.932        
cufflinks 10.775       High
cufflinks 3.845       Low
cufflinks 3.67       Low
cufflinks 3.942       Low
cufflinks 11.149       High
cufflinks 6.395        
cufflinks 8.537        
cufflinks 5.98        
cufflinks 12.282       High
cufflinks 6.804        
cufflinks 7.164        
cufflinks 9.479        
cufflinks 5.446        
cufflinks 7.759        
cufflinks 4.429        
cufflinks 9.656        
cufflinks 3.94       Low
cufflinks 2.938       Low
cufflinks 8.444        

0 Strain