Gene : Seita.9G402800 S. italica v2.2
Defline:  (1 of 1) PTHR10799:SF757 - TRANSCRIPTIONAL COREPRESSOR SEUSS Genomic Order:  4028
Name:  ? Seita.9G402800 Secondary Identifier:  ? PAC:32690333
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G402800 0.5kb upstream 0.5kb upstream 12236 true scaffold_9: 46233294-46245529 Setaria italica
Seita.9G402800 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 46245030-46245529 Setaria italica
Seita.9G402800 0.5kb downstream 0.5kb downstream 12236 true scaffold_9: 46232794-46245029 Setaria italica
Seita.9G402800 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 46232794-46233293 Setaria italica
Seita.9G402800 1.0kb upstream 1.0kb upstream 12736 true scaffold_9: 46233294-46246029 Setaria italica
Seita.9G402800 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 46245030-46246029 Setaria italica
Seita.9G402800 1.0kb downstream 1.0kb downstream 12736 true scaffold_9: 46232294-46245029 Setaria italica
Seita.9G402800 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 46232294-46233293 Setaria italica
Seita.9G402800 2.0kb upstream 2.0kb upstream 13736 true scaffold_9: 46233294-46247029 Setaria italica
Seita.9G402800 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 46245030-46247029 Setaria italica
Seita.9G402800 2.0kb downstream 2.0kb downstream 13736 true scaffold_9: 46231294-46245029 Setaria italica
Seita.9G402800 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 46231294-46233293 Setaria italica
Seita.9G402800 5.0kb upstream 5.0kb upstream 16736 true scaffold_9: 46233294-46250029 Setaria italica
Seita.9G402800 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 46245030-46250029 Setaria italica
Seita.9G402800 5.0kb downstream 5.0kb downstream 16736 true scaffold_9: 46228294-46245029 Setaria italica
Seita.9G402800 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 46228294-46233293 Setaria italica
Seita.9G402800 10.0kb upstream 10.0kb upstream 21736 true scaffold_9: 46233294-46255029 Setaria italica
Seita.9G402800 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 46245030-46255029 Setaria italica
Seita.9G402800 10.0kb downstream 10.0kb downstream 21736 true scaffold_9: 46223294-46245029 Setaria italica
Seita.9G402800 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 46223294-46233293 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181487 5267 Panicoideae View MSA
124579407 5269 Grass View MSA
122043788 5273 Angiosperm View MSA
121344676 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.76     High  
cufflinks 18.901     High  
cufflinks 24.269     High High
cufflinks 21.891     High High
cufflinks 16.295     High  
cufflinks 17.862     High  
cufflinks 18.102     High  
cufflinks 12.359        
cufflinks 14.209     High  
cufflinks 4.766       Low
cufflinks 14.719     High  
cufflinks 11.096        
cufflinks 12.129        
cufflinks 16.392     High  
cufflinks 14.542     High  
cufflinks 20.062     High  
cufflinks 8.86       Low
cufflinks 23.247     High High
cufflinks 15.02     High  
cufflinks 10.686        

0 Strain