Gene : Seita.9G164300 S. italica v2.2
Defline:  (1 of 2) 6.1.1.6 - Lysine--tRNA ligase / Lysyl-tRNA synthetase Genomic Order:  1643
Name:  ? Seita.9G164300 Secondary Identifier:  ? PAC:32686985
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.9G164300 0.5kb upstream 0.5kb upstream 9349 true scaffold_9: 11058769-11068117 Setaria italica
Seita.9G164300 0.5kb upstream 0.5kb upstream 500 false scaffold_9: 11067618-11068117 Setaria italica
Seita.9G164300 0.5kb downstream 0.5kb downstream 9349 true scaffold_9: 11058269-11067617 Setaria italica
Seita.9G164300 0.5kb downstream 0.5kb downstream 500 false scaffold_9: 11058269-11058768 Setaria italica
Seita.9G164300 1.0kb upstream 1.0kb upstream 9849 true scaffold_9: 11058769-11068617 Setaria italica
Seita.9G164300 1.0kb upstream 1.0kb upstream 1000 false scaffold_9: 11067618-11068617 Setaria italica
Seita.9G164300 1.0kb downstream 1.0kb downstream 9849 true scaffold_9: 11057769-11067617 Setaria italica
Seita.9G164300 1.0kb downstream 1.0kb downstream 1000 false scaffold_9: 11057769-11058768 Setaria italica
Seita.9G164300 2.0kb upstream 2.0kb upstream 10849 true scaffold_9: 11058769-11069617 Setaria italica
Seita.9G164300 2.0kb upstream 2.0kb upstream 2000 false scaffold_9: 11067618-11069617 Setaria italica
Seita.9G164300 2.0kb downstream 2.0kb downstream 10849 true scaffold_9: 11056769-11067617 Setaria italica
Seita.9G164300 2.0kb downstream 2.0kb downstream 2000 false scaffold_9: 11056769-11058768 Setaria italica
Seita.9G164300 5.0kb upstream 5.0kb upstream 13849 true scaffold_9: 11058769-11072617 Setaria italica
Seita.9G164300 5.0kb upstream 5.0kb upstream 5000 false scaffold_9: 11067618-11072617 Setaria italica
Seita.9G164300 5.0kb downstream 5.0kb downstream 13849 true scaffold_9: 11053769-11067617 Setaria italica
Seita.9G164300 5.0kb downstream 5.0kb downstream 5000 false scaffold_9: 11053769-11058768 Setaria italica
Seita.9G164300 10.0kb upstream 10.0kb upstream 18849 true scaffold_9: 11058769-11077617 Setaria italica
Seita.9G164300 10.0kb upstream 10.0kb upstream 10000 false scaffold_9: 11067618-11077617 Setaria italica
Seita.9G164300 10.0kb downstream 10.0kb downstream 18849 true scaffold_9: 11048769-11067617 Setaria italica
Seita.9G164300 10.0kb downstream 10.0kb downstream 10000 false scaffold_9: 11048769-11058768 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192952 5267 Panicoideae View MSA
124575425 5269 Grass View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.159        
cufflinks 4.355        
cufflinks 7.754        
cufflinks 6.782        
cufflinks 7.478        
cufflinks 4.293        
cufflinks 8.356       High
cufflinks 8.411       High
cufflinks 10.25       High
cufflinks 2.644       Low
cufflinks 3.571        
cufflinks 3.762        
cufflinks 3.013       Low
cufflinks 5.869        
cufflinks 3.339       Low
cufflinks 9.512       High
cufflinks 3.928        
cufflinks 6.394        
cufflinks 5.065        
cufflinks 3.604        

0 Strain