Gene : Seita.8G025800 S. italica v2.2
Defline:  (1 of 7) PF03435 - Saccharopine dehydrogenase NADP binding domain (Sacchrp_dh_NADP) Genomic Order:  258
Name:  ? Seita.8G025800 Secondary Identifier:  ? PAC:32717162
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.8G025800 0.5kb upstream 0.5kb upstream 7117 true scaffold_8: 1578744-1585860 Setaria italica
Seita.8G025800 0.5kb upstream 0.5kb upstream 500 false scaffold_8: 1578744-1579243 Setaria italica
Seita.8G025800 0.5kb downstream 0.5kb downstream 7117 true scaffold_8: 1579244-1586360 Setaria italica
Seita.8G025800 0.5kb downstream 0.5kb downstream 500 false scaffold_8: 1585861-1586360 Setaria italica
Seita.8G025800 1.0kb upstream 1.0kb upstream 7617 true scaffold_8: 1578244-1585860 Setaria italica
Seita.8G025800 1.0kb upstream 1.0kb upstream 1000 false scaffold_8: 1578244-1579243 Setaria italica
Seita.8G025800 1.0kb downstream 1.0kb downstream 7617 true scaffold_8: 1579244-1586860 Setaria italica
Seita.8G025800 1.0kb downstream 1.0kb downstream 1000 false scaffold_8: 1585861-1586860 Setaria italica
Seita.8G025800 2.0kb upstream 2.0kb upstream 8617 true scaffold_8: 1577244-1585860 Setaria italica
Seita.8G025800 2.0kb upstream 2.0kb upstream 2000 false scaffold_8: 1577244-1579243 Setaria italica
Seita.8G025800 2.0kb downstream 2.0kb downstream 8617 true scaffold_8: 1579244-1587860 Setaria italica
Seita.8G025800 2.0kb downstream 2.0kb downstream 2000 false scaffold_8: 1585861-1587860 Setaria italica
Seita.8G025800 5.0kb upstream 5.0kb upstream 11617 true scaffold_8: 1574244-1585860 Setaria italica
Seita.8G025800 5.0kb upstream 5.0kb upstream 5000 false scaffold_8: 1574244-1579243 Setaria italica
Seita.8G025800 5.0kb downstream 5.0kb downstream 11617 true scaffold_8: 1579244-1590860 Setaria italica
Seita.8G025800 5.0kb downstream 5.0kb downstream 5000 false scaffold_8: 1585861-1590860 Setaria italica
Seita.8G025800 10.0kb upstream 10.0kb upstream 16617 true scaffold_8: 1569244-1585860 Setaria italica
Seita.8G025800 10.0kb upstream 10.0kb upstream 10000 false scaffold_8: 1569244-1579243 Setaria italica
Seita.8G025800 10.0kb downstream 10.0kb downstream 16617 true scaffold_8: 1579244-1595860 Setaria italica
Seita.8G025800 10.0kb downstream 10.0kb downstream 10000 false scaffold_8: 1585861-1595860 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196317 5267 Panicoideae View MSA
124569214 5269 Grass View MSA
122051589 5273 Angiosperm View MSA
121345153 5274 Embryophyte View MSA
123426869 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.246        
cufflinks 0.6        
cufflinks 6.534        
cufflinks 6.359        
cufflinks 5.905        
cufflinks 0.5        
cufflinks 4.352        
cufflinks 5.228        
cufflinks 2.985        
cufflinks 0.025     Low Low
cufflinks 0.091     Low  
cufflinks 0.013     Low Low
cufflinks 0.04     Low Low
cufflinks 4.685        
cufflinks 0.143        
cufflinks 12.746     High High
cufflinks 0.042     Low Low
cufflinks 2.734        
cufflinks 9.515       High
cufflinks 0.031     Low Low

0 Strain