Gene : Seita.5G413400 S. italica v2.2
Defline:  (1 of 1) PTHR34209:SF1 - RHODANESE/CELL CYCLE CONTROL PHOSPHATASE SUPERFAMILY PROTEIN Genomic Order:  4134
Name:  ? Seita.5G413400 Secondary Identifier:  ? PAC:32680743
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G413400 0.5kb upstream 0.5kb upstream 4998 true scaffold_5: 43671365-43676362 Setaria italica
Seita.5G413400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 43675863-43676362 Setaria italica
Seita.5G413400 0.5kb downstream 0.5kb downstream 4998 true scaffold_5: 43670865-43675862 Setaria italica
Seita.5G413400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 43670865-43671364 Setaria italica
Seita.5G413400 1.0kb upstream 1.0kb upstream 5498 true scaffold_5: 43671365-43676862 Setaria italica
Seita.5G413400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 43675863-43676862 Setaria italica
Seita.5G413400 1.0kb downstream 1.0kb downstream 5498 true scaffold_5: 43670365-43675862 Setaria italica
Seita.5G413400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 43670365-43671364 Setaria italica
Seita.5G413400 2.0kb upstream 2.0kb upstream 6498 true scaffold_5: 43671365-43677862 Setaria italica
Seita.5G413400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 43675863-43677862 Setaria italica
Seita.5G413400 2.0kb downstream 2.0kb downstream 6498 true scaffold_5: 43669365-43675862 Setaria italica
Seita.5G413400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 43669365-43671364 Setaria italica
Seita.5G413400 5.0kb upstream 5.0kb upstream 9498 true scaffold_5: 43671365-43680862 Setaria italica
Seita.5G413400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 43675863-43680862 Setaria italica
Seita.5G413400 5.0kb downstream 5.0kb downstream 9498 true scaffold_5: 43666365-43675862 Setaria italica
Seita.5G413400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 43666365-43671364 Setaria italica
Seita.5G413400 10.0kb upstream 10.0kb upstream 14498 true scaffold_5: 43671365-43685862 Setaria italica
Seita.5G413400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 43675863-43685862 Setaria italica
Seita.5G413400 10.0kb downstream 10.0kb downstream 14498 true scaffold_5: 43661365-43675862 Setaria italica
Seita.5G413400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 43661365-43671364 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122044371 5273 Angiosperm View MSA
122180925 5267 Panicoideae View MSA
124575434 5269 Grass View MSA
121350944 5274 Embryophyte View MSA
123425079 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.898        
cufflinks 10.193        
cufflinks 41.423     High  
cufflinks 50.213     High  
cufflinks 84.738     High High
cufflinks 6.651        
cufflinks 56.888     High  
cufflinks 59.736     High  
cufflinks 53.717     High  
cufflinks 3.521        
cufflinks 4.731        
cufflinks 0.197       Low
cufflinks 1.481        
cufflinks 25.918     High  
cufflinks 0.456       Low
cufflinks 76.382     High High
cufflinks 0.352       Low
cufflinks 12.193     High  
cufflinks 66.234     High  
cufflinks 0.392       Low

0 Strain