Gene : Seita.3G253600 S. italica v2.2
Genomic Order:  2536 Name:  ? Seita.3G253600
Secondary Identifier:  ? PAC:32713209
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.3G253600 0.5kb upstream 0.5kb upstream 4866 true scaffold_3: 21996856-22001721 Setaria italica
Seita.3G253600 0.5kb upstream 0.5kb upstream 500 false scaffold_3: 22001222-22001721 Setaria italica
Seita.3G253600 0.5kb downstream 0.5kb downstream 4866 true scaffold_3: 21996356-22001221 Setaria italica
Seita.3G253600 0.5kb downstream 0.5kb downstream 500 false scaffold_3: 21996356-21996855 Setaria italica
Seita.3G253600 1.0kb upstream 1.0kb upstream 5366 true scaffold_3: 21996856-22002221 Setaria italica
Seita.3G253600 1.0kb upstream 1.0kb upstream 1000 false scaffold_3: 22001222-22002221 Setaria italica
Seita.3G253600 1.0kb downstream 1.0kb downstream 5366 true scaffold_3: 21995856-22001221 Setaria italica
Seita.3G253600 1.0kb downstream 1.0kb downstream 1000 false scaffold_3: 21995856-21996855 Setaria italica
Seita.3G253600 2.0kb upstream 2.0kb upstream 6366 true scaffold_3: 21996856-22003221 Setaria italica
Seita.3G253600 2.0kb upstream 2.0kb upstream 2000 false scaffold_3: 22001222-22003221 Setaria italica
Seita.3G253600 2.0kb downstream 2.0kb downstream 6366 true scaffold_3: 21994856-22001221 Setaria italica
Seita.3G253600 2.0kb downstream 2.0kb downstream 2000 false scaffold_3: 21994856-21996855 Setaria italica
Seita.3G253600 5.0kb upstream 5.0kb upstream 9366 true scaffold_3: 21996856-22006221 Setaria italica
Seita.3G253600 5.0kb upstream 5.0kb upstream 5000 false scaffold_3: 22001222-22006221 Setaria italica
Seita.3G253600 5.0kb downstream 5.0kb downstream 9366 true scaffold_3: 21991856-22001221 Setaria italica
Seita.3G253600 5.0kb downstream 5.0kb downstream 5000 false scaffold_3: 21991856-21996855 Setaria italica
Seita.3G253600 10.0kb upstream 10.0kb upstream 14366 true scaffold_3: 21996856-22011221 Setaria italica
Seita.3G253600 10.0kb upstream 10.0kb upstream 10000 false scaffold_3: 22001222-22011221 Setaria italica
Seita.3G253600 10.0kb downstream 10.0kb downstream 14366 true scaffold_3: 21986856-22001221 Setaria italica
Seita.3G253600 10.0kb downstream 10.0kb downstream 10000 false scaffold_3: 21986856-21996855 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176419 5267 Panicoideae View MSA
124577792 5269 Grass View MSA
122044872 5273 Angiosperm View MSA
121348914 5274 Embryophyte View MSA
123381076 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.786        
cufflinks 6.556        
cufflinks 4.274        
cufflinks 3.331        
cufflinks 6.588        
cufflinks 6.104        
cufflinks 7.131       High
cufflinks 8.669       High
cufflinks 14.25     High High
cufflinks 2.704        
cufflinks 3.013        
cufflinks 2.024       Low
cufflinks 1.989       Low
cufflinks 5.719        
cufflinks 2.314        
cufflinks 4.945        
cufflinks 2.531        
cufflinks 2.624        
cufflinks 2.096       Low
cufflinks 2.118       Low

0 Strain