Gene : Seita.2G043300 S. italica v2.2
Defline:  (1 of 1) PTHR22870:SF175 - ANKYRIN REPEAT AND REGULATOR OF CHROMOSOME CONDENSATION (RCC1) DOMAIN-CONTAINING PROTEIN Genomic Order:  433
Name:  ? Seita.2G043300 Secondary Identifier:  ? PAC:32719031
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.2G043300 0.5kb upstream 0.5kb upstream 7512 true scaffold_2: 3481802-3489313 Setaria italica
Seita.2G043300 0.5kb upstream 0.5kb upstream 500 false scaffold_2: 3488814-3489313 Setaria italica
Seita.2G043300 0.5kb downstream 0.5kb downstream 7512 true scaffold_2: 3481302-3488813 Setaria italica
Seita.2G043300 0.5kb downstream 0.5kb downstream 500 false scaffold_2: 3481302-3481801 Setaria italica
Seita.2G043300 1.0kb upstream 1.0kb upstream 8012 true scaffold_2: 3481802-3489813 Setaria italica
Seita.2G043300 1.0kb upstream 1.0kb upstream 1000 false scaffold_2: 3488814-3489813 Setaria italica
Seita.2G043300 1.0kb downstream 1.0kb downstream 8012 true scaffold_2: 3480802-3488813 Setaria italica
Seita.2G043300 1.0kb downstream 1.0kb downstream 1000 false scaffold_2: 3480802-3481801 Setaria italica
Seita.2G043300 2.0kb upstream 2.0kb upstream 9012 true scaffold_2: 3481802-3490813 Setaria italica
Seita.2G043300 2.0kb upstream 2.0kb upstream 2000 false scaffold_2: 3488814-3490813 Setaria italica
Seita.2G043300 2.0kb downstream 2.0kb downstream 9012 true scaffold_2: 3479802-3488813 Setaria italica
Seita.2G043300 2.0kb downstream 2.0kb downstream 2000 false scaffold_2: 3479802-3481801 Setaria italica
Seita.2G043300 5.0kb upstream 5.0kb upstream 12012 true scaffold_2: 3481802-3493813 Setaria italica
Seita.2G043300 5.0kb upstream 5.0kb upstream 5000 false scaffold_2: 3488814-3493813 Setaria italica
Seita.2G043300 5.0kb downstream 5.0kb downstream 12012 true scaffold_2: 3476802-3488813 Setaria italica
Seita.2G043300 5.0kb downstream 5.0kb downstream 5000 false scaffold_2: 3476802-3481801 Setaria italica
Seita.2G043300 10.0kb upstream 10.0kb upstream 17012 true scaffold_2: 3481802-3498813 Setaria italica
Seita.2G043300 10.0kb upstream 10.0kb upstream 10000 false scaffold_2: 3488814-3498813 Setaria italica
Seita.2G043300 10.0kb downstream 10.0kb downstream 17012 true scaffold_2: 3471802-3488813 Setaria italica
Seita.2G043300 10.0kb downstream 10.0kb downstream 10000 false scaffold_2: 3471802-3481801 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183349 5267 Panicoideae View MSA
124577143 5269 Grass View MSA
122044253 5273 Angiosperm View MSA
121345534 5274 Embryophyte View MSA
123428657 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.496        
cufflinks 13.049        
cufflinks 10.585        
cufflinks 10.271        
cufflinks 9.363        
cufflinks 12.98        
cufflinks 10.824        
cufflinks 8.394        
cufflinks 9.776        
cufflinks 5.408       Low
cufflinks 11.217        
cufflinks 26.199     High High
cufflinks 10.195        
cufflinks 7.821       Low
cufflinks 11.521        
cufflinks 14.377     High  
cufflinks 12.071        
cufflinks 9.127        
cufflinks 14.073     High  
cufflinks 24.561     High High

0 Strain