Gene : Seita.1G034700 S. italica v2.2
Defline:  (1 of 2) PTHR15184//PTHR15184:SF52 - ATP SYNTHASE Genomic Order:  347
Name:  ? Seita.1G034700 Secondary Identifier:  ? PAC:32697872
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.1G034700 0.5kb upstream 0.5kb upstream 5839 true scaffold_1: 3349907-3355745 Setaria italica
Seita.1G034700 0.5kb upstream 0.5kb upstream 500 false scaffold_1: 3349907-3350406 Setaria italica
Seita.1G034700 0.5kb downstream 0.5kb downstream 5839 true scaffold_1: 3350407-3356245 Setaria italica
Seita.1G034700 0.5kb downstream 0.5kb downstream 500 false scaffold_1: 3355746-3356245 Setaria italica
Seita.1G034700 1.0kb upstream 1.0kb upstream 6339 true scaffold_1: 3349407-3355745 Setaria italica
Seita.1G034700 1.0kb upstream 1.0kb upstream 1000 false scaffold_1: 3349407-3350406 Setaria italica
Seita.1G034700 1.0kb downstream 1.0kb downstream 6339 true scaffold_1: 3350407-3356745 Setaria italica
Seita.1G034700 1.0kb downstream 1.0kb downstream 1000 false scaffold_1: 3355746-3356745 Setaria italica
Seita.1G034700 2.0kb upstream 2.0kb upstream 7339 true scaffold_1: 3348407-3355745 Setaria italica
Seita.1G034700 2.0kb upstream 2.0kb upstream 2000 false scaffold_1: 3348407-3350406 Setaria italica
Seita.1G034700 2.0kb downstream 2.0kb downstream 7339 true scaffold_1: 3350407-3357745 Setaria italica
Seita.1G034700 2.0kb downstream 2.0kb downstream 2000 false scaffold_1: 3355746-3357745 Setaria italica
Seita.1G034700 5.0kb upstream 5.0kb upstream 10339 true scaffold_1: 3345407-3355745 Setaria italica
Seita.1G034700 5.0kb upstream 5.0kb upstream 5000 false scaffold_1: 3345407-3350406 Setaria italica
Seita.1G034700 5.0kb downstream 5.0kb downstream 10339 true scaffold_1: 3350407-3360745 Setaria italica
Seita.1G034700 5.0kb downstream 5.0kb downstream 5000 false scaffold_1: 3355746-3360745 Setaria italica
Seita.1G034700 10.0kb upstream 10.0kb upstream 15339 true scaffold_1: 3340407-3355745 Setaria italica
Seita.1G034700 10.0kb upstream 10.0kb upstream 10000 false scaffold_1: 3340407-3350406 Setaria italica
Seita.1G034700 10.0kb downstream 10.0kb downstream 15339 true scaffold_1: 3350407-3365745 Setaria italica
Seita.1G034700 10.0kb downstream 10.0kb downstream 10000 false scaffold_1: 3355746-3365745 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189802 5267 Panicoideae View MSA
124466043 5269 Grass View MSA
122046157 5273 Angiosperm View MSA
121350179 5274 Embryophyte View MSA
123423759 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.364        
cufflinks 19.917     High  
cufflinks 3.646       Low
cufflinks 3.497       Low
cufflinks 3.774       Low
cufflinks 14.655     High  
cufflinks 13.589     High  
cufflinks 11.614        
cufflinks 12.863     High  
cufflinks 15.445        
cufflinks 25.261     High  
cufflinks 26.429     High  
cufflinks 31.672     High High
cufflinks 3.822       Low
cufflinks 28.385     High High
cufflinks 4.398       Low
cufflinks 29.037     High High
cufflinks 3.403       Low
cufflinks 5.168        
cufflinks 39.071     High High

0 Strain