Protein Domain : IPR005574

Type:  Family Name:  RNA polymerase II, Rpb4
Description:  The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologues are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable []. Short Name:  RNA_pol_II_Rpb4
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1 Child Features

DB identifier Type Name
IPR010924 Family DNA-directed RNA polymerase subunit F (Rpo4)

2 Contains

DB identifier Type Name
IPR006590 Domain RNA polymerase II, Rpb4, core
IPR010997 Domain HRDC-like

1 Cross References

Identifier
PF03874

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0003899 IPR005574
GO:0006351 IPR005574

2 Ontology Annotations

GO Term Gene Name
GO:0003899 IPR005574
GO:0006351 IPR005574

0 Parent Features

3256 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
408420 D8R887 PAC:15421727 Selaginella moellendorffii 198  
144908 D8R9N1 PAC:15422048 Selaginella moellendorffii 136  
evm.model.supercontig_191.12 PAC:16412160 Carica papaya 138  
evm.model.supercontig_3.343 PAC:16416639 Carica papaya 138  
29757.m000755 B9SHR6 PAC:16808028 Ricinus communis 138  
29836.m000577 B9SGB4 PAC:16810289 Ricinus communis 203  
29680.m001732 B9S7P5 PAC:16805562 Ricinus communis 138  
Cucsa.325900.1 A0A0A0K7V5 PAC:16978007 Cucumis sativus 138  
Cucsa.325900.2 A0A0A0K7V5 PAC:16978008 Cucumis sativus 138  
Cucsa.044470.1 PAC:16953210 Cucumis sativus 262  
Cucsa.238130.1 PAC:16970679 Cucumis sativus 89  
orange1.1g042488m PAC:18124310 Citrus sinensis 78  
orange1.1g027312m A0A067GJ09 PAC:18112451 Citrus sinensis 225  
orange1.1g028639m A0A067GTL9 PAC:18112452 Citrus sinensis 206  
orange1.1g031138m A0A067GG76 PAC:18105789 Citrus sinensis 165  
orange1.1g031131m A0A067GG76 PAC:18105788 Citrus sinensis 165  
orange1.1g032568m PAC:18091094 Citrus sinensis 138  
AT4G15950.1 Q6DBA5 PAC:19647213 Arabidopsis thaliana 205  
AT5G09920.1 O48890 PAC:19668095 Arabidopsis thaliana 138  
AT5G62950.1 Q7XJ61 PAC:19669653 Arabidopsis thaliana 139  
AT5G62950.2 A8MS47 PAC:19669655 Arabidopsis thaliana 106  
AT5G62950.3 Q7XJ61 PAC:19669654 Arabidopsis thaliana 139  
AT3G28956.1 F4J1Q7 PAC:19663060 Arabidopsis thaliana 137  
Thhalv10000370m V4LVA6 PAC:20208395 Eutrema salsugineum 139  
Thhalv10014981m V4LB78 PAC:20203509 Eutrema salsugineum 137  
Thhalv10014976m V4KSK0 PAC:20203508 Eutrema salsugineum 138  
Thhalv10001026m V4L8D7 PAC:20202822 Eutrema salsugineum 208  
Thhalv10005100m V4KW62 PAC:20199250 Eutrema salsugineum 140  
Ciclev10026800m V4UP48 PAC:20802202 Citrus clementina 114  
Ciclev10026735m V4SQR4 PAC:20802201 Citrus clementina 138  

1 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11741548