Protein Domain : IPR004483

Type:  Family Name:  Helicase SMUBP-2/Hcs1-like
Description:  Proteins in this entry belong to the DNA2/NAM7 helicase family, including SMUBP-2 from humans, DNA polymerase alpha-associated DNA helicase A (also konwn as Hcs1) from budding yeasts and some putative helicases from prokaryotes. DNA-binding protein SMUBP-2 (also known as IGHMBP2, CATF1) is a 5' to 3' helicase that unwinds RNA and DNA duplices in an ATP-dependent reaction []. It acts as a transcription regulator. It exhibits strong binding specificity to the enhancer element B of the flounder antifreeze protein gene intron []. It binds to 5'-phosphorylated single-stranded guanine-rich DNA sequence related to the immunoglobulin mu chain switch region. It preferentially binds to the 5'-GGGCT-3' motif. It also interacts with tRNA-Tyr []. In human, defects in IGHMBP2 are the cause of distal hereditary motor neuronopathy type 6 (HMN6); also known as spinal muscular atrophy distal autosomal recessive 1 (DSMA1) or spinal muscular atrophy with respiratory distress 1 (SMARD1) [].Hcs1 may be involved in DNA replication []. Short Name:  SMUBP-2/Hcs1-like

0 Child Features

1 Contains

DB identifier Type Name
IPR014001 Domain Helicase superfamily 1/2, ATP-binding domain

1 Cross References

Identifier
TIGR00376

0 Found In

2 GO Annotations

GO Term Gene Name
GO:0003677 IPR004483
GO:0005524 IPR004483

2 Ontology Annotations

GO Term Gene Name
GO:0003677 IPR004483
GO:0005524 IPR004483

0 Parent Features

422 Proteins

DB identifier UniProt Accession Secondary Identifier Organism Name Length
179218 D8SF14 PAC:15408341 Selaginella moellendorffii 643  
evm.model.supercontig_92.15 PAC:16428582 Carica papaya 643  
27810.m000640 B9SL55 PAC:16799245 Ricinus communis 644  
Cucsa.336880.1 A0A0A0LEK1 PAC:16978516 Cucumis sativus 647  
orange1.1g006386m A0A067DUZ3 PAC:18121110 Citrus sinensis 647  
AT2G03270.1 O81047 PAC:19643252 Arabidopsis thaliana 639  
Thhalv10003809m V4K642 PAC:20198981 Eutrema salsugineum 643  
Thhalv10003810m V4K642 PAC:20198982 Eutrema salsugineum 643  
Ciclev10004523m V4S322 PAC:20791294 Citrus clementina 647  
Lus10042360 PAC:23153535 Linum usitatissimum 542  
Lus10026309 PAC:23156615 Linum usitatissimum 654  
Potri.006G054600.1 B9HA63 PAC:27006748 Populus trichocarpa 647  
Gorai.006G138300.1 A0A0D2S353 PAC:26833223 Gossypium raimondii 649  
Thecc1EG024757t1 A0A061EX06 PAC:27422749 Theobroma cacao 648  
Thecc1EG024757t2 A0A061EX06 PAC:27422750 Theobroma cacao 648  
Migut.J01781.1.p A0A022PSK2 PAC:28942117 Mimulus guttatus 652  
Araha.6867s0003.1.p PAC:28840160 Arabidopsis halleri 643  
Cagra.21548s0002.1.p PAC:28904968 Capsella grandiflora 643  
Glyma.03G139000.1.p I1JNF0 PAC:30517050 Glycine max 648  
Glyma.19G142100.4.p I1N931 PAC:30511903 Glycine max 579  
Glyma.19G142100.1.p I1N930 PAC:30511902 Glycine max 648  
Brara.I02083.1.p A0A397Y406 PAC:30644372 Brassica rapa FPsc 643  
Bostr.0556s0143.1.p PAC:30664194 Boechera stricta 643  
Medtr7g092200.1 G7KTL0 PAC:31084217 Medicago truncatula 645  
SapurV1A.0133s0320.1.p PAC:31409814 Salix purpurea 647  
Spipo2G0069600 PAC:31510747 Spirodela polyrhiza 638  
evm_27.model.AmTr_v1.0_scaffold00022.383 W1PVD6 PAC:31552538 Amborella trichopoda 646  
Traes_5AL_F1DF79946.2 PAC:31935475 Triticum aestivum 579  
Traes_5AL_F1DF79946.1 PAC:31935474 Triticum aestivum 579  
Traes_5AL_F1DF79946.3 PAC:31935476 Triticum aestivum 545  

4 Publications

First Author Title Year Journal Volume Pages PubMed ID
            11528396
            19158098
            11106437
            9341218