Gene : Eucgr.K00236 E. grandis v2.0
Defline:  (1 of 1) PTHR24128:SF13 - E3 UBIQUITIN-PROTEIN LIGASE XBAT33 Genomic Order:  172
Name:  ? Eucgr.K00236 Secondary Identifier:  ? PAC:32069023
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.K00236 0.5kb upstream 0.5kb upstream 6066 true Chr11: 1933584-1939649 Eucalyptus grandis
Eucgr.K00236 0.5kb upstream 0.5kb upstream 500 false Chr11: 1933584-1934083 Eucalyptus grandis
Eucgr.K00236 0.5kb downstream 0.5kb downstream 6066 true Chr11: 1934084-1940149 Eucalyptus grandis
Eucgr.K00236 0.5kb downstream 0.5kb downstream 500 false Chr11: 1939650-1940149 Eucalyptus grandis
Eucgr.K00236 1.0kb upstream 1.0kb upstream 6566 true Chr11: 1933084-1939649 Eucalyptus grandis
Eucgr.K00236 1.0kb upstream 1.0kb upstream 1000 false Chr11: 1933084-1934083 Eucalyptus grandis
Eucgr.K00236 1.0kb downstream 1.0kb downstream 6566 true Chr11: 1934084-1940649 Eucalyptus grandis
Eucgr.K00236 1.0kb downstream 1.0kb downstream 1000 false Chr11: 1939650-1940649 Eucalyptus grandis
Eucgr.K00236 2.0kb upstream 2.0kb upstream 7566 true Chr11: 1932084-1939649 Eucalyptus grandis
Eucgr.K00236 2.0kb upstream 2.0kb upstream 2000 false Chr11: 1932084-1934083 Eucalyptus grandis
Eucgr.K00236 2.0kb downstream 2.0kb downstream 7566 true Chr11: 1934084-1941649 Eucalyptus grandis
Eucgr.K00236 2.0kb downstream 2.0kb downstream 2000 false Chr11: 1939650-1941649 Eucalyptus grandis
Eucgr.K00236 5.0kb upstream 5.0kb upstream 10566 true Chr11: 1929084-1939649 Eucalyptus grandis
Eucgr.K00236 5.0kb upstream 5.0kb upstream 5000 false Chr11: 1929084-1934083 Eucalyptus grandis
Eucgr.K00236 5.0kb downstream 5.0kb downstream 10566 true Chr11: 1934084-1944649 Eucalyptus grandis
Eucgr.K00236 5.0kb downstream 5.0kb downstream 5000 false Chr11: 1939650-1944649 Eucalyptus grandis
Eucgr.K00236 10.0kb upstream 10.0kb upstream 15566 true Chr11: 1924084-1939649 Eucalyptus grandis
Eucgr.K00236 10.0kb upstream 10.0kb upstream 10000 false Chr11: 1924084-1934083 Eucalyptus grandis
Eucgr.K00236 10.0kb downstream 10.0kb downstream 15566 true Chr11: 1934084-1949649 Eucalyptus grandis
Eucgr.K00236 10.0kb downstream 10.0kb downstream 10000 false Chr11: 1939650-1949649 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061674 5270 Rosid View MSA
123746531 5271 Pentapetalae View MSA
122792004 5272 Eudicot View MSA
122042206 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121348775 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.9247 0.0 57.3493    
cufflinks 29.2603 0.0 64.8394    
cufflinks 27.5217 0.0 60.9219 High  
cufflinks 29.8339 0.0 66.1618    
cufflinks 20.0761 0.0 44.4201   Low
cufflinks 30.9713 0.0 68.6399    

0 Strain