Gene : Eucgr.C02720 E. grandis v2.0
Defline:  (1 of 2) PTHR11879:SF1 - ASPARTATE AMINOTRANSFERASE, CHLOROPLASTIC Genomic Order:  2213
Name:  ? Eucgr.C02720 Secondary Identifier:  ? PAC:32037864
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis ASPARTATE-DEG1-PWY Eucalyptus grandis pathologic  
Egrandis ASPARTATESYN-PWY Eucalyptus grandis pathologic  
Egrandis PWY-3001 Eucalyptus grandis pathologic  
Egrandis PWY-7115 Eucalyptus grandis pathologic  
Egrandis PWY-7117 Eucalyptus grandis pathologic  
Egrandis THRESYN-PWY Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.C02720 0.5kb upstream 0.5kb upstream 4778 true Chr03: 56093806-56098583 Eucalyptus grandis
Eucgr.C02720 0.5kb upstream 0.5kb upstream 500 false Chr03: 56093806-56094305 Eucalyptus grandis
Eucgr.C02720 0.5kb downstream 0.5kb downstream 4778 true Chr03: 56094306-56099083 Eucalyptus grandis
Eucgr.C02720 0.5kb downstream 0.5kb downstream 500 false Chr03: 56098584-56099083 Eucalyptus grandis
Eucgr.C02720 1.0kb upstream 1.0kb upstream 5278 true Chr03: 56093306-56098583 Eucalyptus grandis
Eucgr.C02720 1.0kb upstream 1.0kb upstream 1000 false Chr03: 56093306-56094305 Eucalyptus grandis
Eucgr.C02720 1.0kb downstream 1.0kb downstream 5278 true Chr03: 56094306-56099583 Eucalyptus grandis
Eucgr.C02720 1.0kb downstream 1.0kb downstream 1000 false Chr03: 56098584-56099583 Eucalyptus grandis
Eucgr.C02720 2.0kb upstream 2.0kb upstream 6278 true Chr03: 56092306-56098583 Eucalyptus grandis
Eucgr.C02720 2.0kb upstream 2.0kb upstream 2000 false Chr03: 56092306-56094305 Eucalyptus grandis
Eucgr.C02720 2.0kb downstream 2.0kb downstream 6278 true Chr03: 56094306-56100583 Eucalyptus grandis
Eucgr.C02720 2.0kb downstream 2.0kb downstream 2000 false Chr03: 56098584-56100583 Eucalyptus grandis
Eucgr.C02720 5.0kb upstream 5.0kb upstream 9278 true Chr03: 56089306-56098583 Eucalyptus grandis
Eucgr.C02720 5.0kb upstream 5.0kb upstream 5000 false Chr03: 56089306-56094305 Eucalyptus grandis
Eucgr.C02720 5.0kb downstream 5.0kb downstream 9278 true Chr03: 56094306-56103583 Eucalyptus grandis
Eucgr.C02720 5.0kb downstream 5.0kb downstream 5000 false Chr03: 56098584-56103583 Eucalyptus grandis
Eucgr.C02720 10.0kb upstream 10.0kb upstream 14278 true Chr03: 56084306-56098583 Eucalyptus grandis
Eucgr.C02720 10.0kb upstream 10.0kb upstream 10000 false Chr03: 56084306-56094305 Eucalyptus grandis
Eucgr.C02720 10.0kb downstream 10.0kb downstream 14278 true Chr03: 56094306-56108583 Eucalyptus grandis
Eucgr.C02720 10.0kb downstream 10.0kb downstream 10000 false Chr03: 56098584-56108583 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124066749 5270 Rosid View MSA
123740507 5271 Pentapetalae View MSA
122797537 5272 Eudicot View MSA
122048100 5273 Angiosperm View MSA
121346908 5274 Embryophyte View MSA
123424622 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 57.7556 0.0 152.819 High High
cufflinks 27.2105 0.0 61.4828   Low
cufflinks 46.7385 0.0 113.986 High  
cufflinks 30.0283 0.0 74.8633    
cufflinks 30.3405 0.0 76.0804    
cufflinks 52.5168 0.0 150.198 High  

0 Strain