Gene : Eucgr.A01100 E. grandis v2.0
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  1508
Name:  ? Eucgr.A01100 Secondary Identifier:  ? PAC:32048347
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Egrandis CAROTENOID-PWY Eucalyptus grandis pathologic  
Egrandis PWY-5943 Eucalyptus grandis pathologic  
Egrandis PWY-5947 Eucalyptus grandis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Eucgr.A01100 0.5kb upstream 0.5kb upstream 7850 true Chr01: 31195478-31203327 Eucalyptus grandis
Eucgr.A01100 0.5kb upstream 0.5kb upstream 500 false Chr01: 31195478-31195977 Eucalyptus grandis
Eucgr.A01100 0.5kb downstream 0.5kb downstream 7850 true Chr01: 31195978-31203827 Eucalyptus grandis
Eucgr.A01100 0.5kb downstream 0.5kb downstream 500 false Chr01: 31203328-31203827 Eucalyptus grandis
Eucgr.A01100 1.0kb upstream 1.0kb upstream 8350 true Chr01: 31194978-31203327 Eucalyptus grandis
Eucgr.A01100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 31194978-31195977 Eucalyptus grandis
Eucgr.A01100 1.0kb downstream 1.0kb downstream 8350 true Chr01: 31195978-31204327 Eucalyptus grandis
Eucgr.A01100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 31203328-31204327 Eucalyptus grandis
Eucgr.A01100 2.0kb upstream 2.0kb upstream 9350 true Chr01: 31193978-31203327 Eucalyptus grandis
Eucgr.A01100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 31193978-31195977 Eucalyptus grandis
Eucgr.A01100 2.0kb downstream 2.0kb downstream 9350 true Chr01: 31195978-31205327 Eucalyptus grandis
Eucgr.A01100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 31203328-31205327 Eucalyptus grandis
Eucgr.A01100 5.0kb upstream 5.0kb upstream 12350 true Chr01: 31190978-31203327 Eucalyptus grandis
Eucgr.A01100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 31190978-31195977 Eucalyptus grandis
Eucgr.A01100 5.0kb downstream 5.0kb downstream 12350 true Chr01: 31195978-31208327 Eucalyptus grandis
Eucgr.A01100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 31203328-31208327 Eucalyptus grandis
Eucgr.A01100 10.0kb upstream 10.0kb upstream 17350 true Chr01: 31185978-31203327 Eucalyptus grandis
Eucgr.A01100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 31185978-31195977 Eucalyptus grandis
Eucgr.A01100 10.0kb downstream 10.0kb downstream 17350 true Chr01: 31195978-31213327 Eucalyptus grandis
Eucgr.A01100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 31203328-31213327 Eucalyptus grandis

6 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124061081 5270 Rosid View MSA
123739346 5271 Pentapetalae View MSA
122787287 5272 Eudicot View MSA
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.3888 0.0 32.6904    
cufflinks 0.42756 0.0 1.58684 Low Low
cufflinks 9.89979 0.0 24.9631    
cufflinks 0.944703 0.0 2.89872    
cufflinks 1.42723 0.0 4.08181    
cufflinks 38.2263 0.0 88.144 High High

0 Strain