Gene : orange1.1g008040m.g C. sinensis v1.1
Defline:  (1 of 1) PTHR22594:SF20 - LYSINE--TRNA LIGASE Genomic Order:  21
Name:  ? orange1.1g008040m.g Secondary Identifier:  ? PAC:18110118
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Csinensis TRNA-CHARGING-PWY Citrus sinensis pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
orange1.1g008040m.g 0.5kb upstream 0.5kb upstream 6523 true scaffold00123: 178603-185125 Citrus sinensis
orange1.1g008040m.g 0.5kb upstream 0.5kb upstream 500 false scaffold00123: 178603-179102 Citrus sinensis
orange1.1g008040m.g 0.5kb downstream 0.5kb downstream 6523 true scaffold00123: 179103-185625 Citrus sinensis
orange1.1g008040m.g 0.5kb downstream 0.5kb downstream 500 false scaffold00123: 185126-185625 Citrus sinensis
orange1.1g008040m.g 1.0kb upstream 1.0kb upstream 7023 true scaffold00123: 178103-185125 Citrus sinensis
orange1.1g008040m.g 1.0kb upstream 1.0kb upstream 1000 false scaffold00123: 178103-179102 Citrus sinensis
orange1.1g008040m.g 1.0kb downstream 1.0kb downstream 7023 true scaffold00123: 179103-186125 Citrus sinensis
orange1.1g008040m.g 1.0kb downstream 1.0kb downstream 1000 false scaffold00123: 185126-186125 Citrus sinensis
orange1.1g008040m.g 2.0kb upstream 2.0kb upstream 8023 true scaffold00123: 177103-185125 Citrus sinensis
orange1.1g008040m.g 2.0kb upstream 2.0kb upstream 2000 false scaffold00123: 177103-179102 Citrus sinensis
orange1.1g008040m.g 2.0kb downstream 2.0kb downstream 8023 true scaffold00123: 179103-187125 Citrus sinensis
orange1.1g008040m.g 2.0kb downstream 2.0kb downstream 2000 false scaffold00123: 185126-187125 Citrus sinensis
orange1.1g008040m.g 5.0kb upstream 5.0kb upstream 11023 true scaffold00123: 174103-185125 Citrus sinensis
orange1.1g008040m.g 5.0kb upstream 5.0kb upstream 5000 false scaffold00123: 174103-179102 Citrus sinensis
orange1.1g008040m.g 5.0kb downstream 5.0kb downstream 11023 true scaffold00123: 179103-190125 Citrus sinensis
orange1.1g008040m.g 5.0kb downstream 5.0kb downstream 5000 false scaffold00123: 185126-190125 Citrus sinensis
orange1.1g008040m.g 10.0kb upstream 10.0kb upstream 16023 true scaffold00123: 169103-185125 Citrus sinensis
orange1.1g008040m.g 10.0kb upstream 10.0kb upstream 10000 false scaffold00123: 169103-179102 Citrus sinensis
orange1.1g008040m.g 10.0kb downstream 10.0kb downstream 16023 true scaffold00123: 179103-195125 Citrus sinensis
orange1.1g008040m.g 10.0kb downstream 10.0kb downstream 10000 false scaffold00123: 185126-195125 Citrus sinensis

8 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
124344689 5266 SBM View MSA
124239048 5268 Malvidae View MSA
124063653 5270 Rosid View MSA
123739204 5271 Pentapetalae View MSA
122788489 5272 Eudicot View MSA
122044302 5273 Angiosperm View MSA
121346599 5274 Embryophyte View MSA
123423817 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain