Protein Family : expressed protein 123428354

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  6491

3198 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29700.t000008 (1 of 40) PF13966 - zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 567   29700: 180872-181438
29703.t000062 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 1364   29703: 298678-300041
29703.t000065 (1 of 18) PTHR19446:SF340 - REVERSE TRANSCRIPTASE-RELATED R. communis v0.1 565   29703: 310097-310661
29724.t000025 (1 of 7) PTHR31286:SF1 - NUCLEIC ACID BINDING / ZINC ION BINDING PROTEIN-RELATED R. communis v0.1 504   29724: 366681-367184
29739.t000055 (1 of 3) PTHR19446//PTHR19446:SF387 - REVERSE TRANSCRIPTASES // SUBFAMILY NOT NAMED R. communis v0.1 1189   29739: 322318-323506
29739.t000102 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 968   29739: 629714-630681
29740.t000003 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 396   29740: 38230-38625
29748.t000008 (1 of 18) PTHR33033:SF17 - POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN R. communis v0.1 444   29748: 183761-184204
29810.t000011 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 288   29810: 60449-60736
29813.t000056 (1 of 5) PF13456//PF13966 - Reverse transcriptase-like (RVT_3) // zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 1557   29813: 352112-353668
29825.t000007 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 342   29825: 51189-51530
29836.t000032 hypothetical protein R. communis v0.1 1826   29836: 382462-384287
29838.t000053 (1 of 5) PF13456//PF13966 - Reverse transcriptase-like (RVT_3) // zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 1577   29838: 331430-333006
29848.t000190 conserved hypothetical protein R. communis v0.1 495   29848: 1071133-1071627
29854.t000023 (1 of 40) PF13966 - zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 848   29854: 614831-615678
29854.t000025 (1 of 32) PF03372 - Endonuclease/Exonuclease/phosphatase family (Exo_endo_phos) R. communis v0.1 1255   29854: 622299-623553
29864.t000050 conserved hypothetical protein R. communis v0.1 899   29864: 721601-722499
29869.t000011 (1 of 7) PTHR31286:SF1 - NUCLEIC ACID BINDING / ZINC ION BINDING PROTEIN-RELATED R. communis v0.1 969   29869: 146103-147071
29869.t000033 (1 of 18) PTHR33033:SF17 - POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN R. communis v0.1 450   29869: 339226-339675
29877.t000018 (1 of 40) PF13966 - zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 402   29877: 161688-162089
29878.t000012 conserved hypothetical protein R. communis v0.1 842   29878: 104255-105096
29880.t000005 (1 of 7) PTHR31286:SF1 - NUCLEIC ACID BINDING / ZINC ION BINDING PROTEIN-RELATED R. communis v0.1 312   29880: 207998-208309
29888.t000012 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 360   29888: 170814-171173
29904.t000139 (1 of 129) PF13456 - Reverse transcriptase-like (RVT_3) R. communis v0.1 378   29904: 948845-949222
29910.t000021 (1 of 5) PF13456//PF13966 - Reverse transcriptase-like (RVT_3) // zinc-binding in reverse transcriptase (zf-RVT) R. communis v0.1 1341   29910: 287513-288853
29927.t000017 conserved hypothetical protein R. communis v0.1 597   29927: 154075-154671
29933.t000066 (1 of 5) 3.1.26.4 - Ribonuclease H / RNase H R. communis v0.1 606   29933: 360620-361225
29939.t000005 (1 of 18) PTHR33033:SF17 - POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN R. communis v0.1 630   29939: 119267-119896
29942.t000003 (1 of 36) PF14111 - Domain of unknown function (DUF4283) (DUF4283) R. communis v0.1 405   29942: 34428-34832
29968.t000010 (1 of 18) PTHR19446:SF340 - REVERSE TRANSCRIPTASE-RELATED R. communis v0.1 844   29968: 74158-75001

5895 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29854.m001112 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29848.m004634 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29838.m001683 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29836.m000585 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29825.m000319 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29813.m001504 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29810.m000147 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29748.m000384 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29740.m000471 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29739.m003666 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29700.m000752 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29703.m001526 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29703.m001529 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29724.m000845 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29673.m000908 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
27904.m000210 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29661.m000941 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29679.m000386 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29176.m000144 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28161.m000230 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29593.m000176 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29641.m000379 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29607.m000244 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28657.m000384 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28152.m000874 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29687.m000581 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28053.m000051 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
29647.m001999 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28093.m000123 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae
28312.m000132 R. communis v0.1 123428354 expressed protein 101 5275 Viridiplantae