Protein Family : retrotransposon protein, putative, unclassified, expressed 123426292

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  4000

4264 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29808.t000008 (1 of 1) PF02721 - Domain of unknown function DUF223 (DUF223) R. communis v0.1 415   29808: 252877-253291
29938.t000003 (1 of 3) PF05970 - PIF1-like helicase (PIF1) R. communis v0.1 607   29938: 10450-11056
29993.t000035 (1 of 1) K15255 - ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] (PIF1) R. communis v0.1 1539   29993: 702462-704000
Cucsa.212420 (1 of 4) PF05970 - PIF1-like helicase (PIF1) C. sativus v1.0 1150   scaffold01543: 240713-241862
orange1.1g044416m.g (1 of 1) PF02689 - Helicase (Herpes_Helicase) C. sinensis v1.1 738   scaffold05930: 1-738
AT5G28780 (1 of 3) K15255 - ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] (PIF1) A. thaliana TAIR10 1267   Chr5: 10812907-10814173
AT3G32260 (1 of 5) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A. thaliana TAIR10 2289   Chr3: 13219168-13221456
AT3G51700 (1 of 3) K15255 - ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] (PIF1) A. thaliana TAIR10 1924   Chr3: 19179266-19181189
AT3G51690 (1 of 3) K15255 - ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] (PIF1) A. thaliana TAIR10 1788   Chr3: 19176374-19178161
AT1G52950 (1 of 2) PF02721//PF08646 - Domain of unknown function DUF223 (DUF223) // Replication factor-A C terminal domain (Rep_fac-A_C) A. thaliana TAIR10 2525   Chr1: 19725483-19728007
AT1G36510 (1 of 5) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A. thaliana TAIR10 2340   Chr1: 13761926-13764265
AT2G05642 (1 of 2) PTHR23273//PTHR23273:SF16 - REPLICATION FACTOR A 1, RFA1 // NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN A. thaliana TAIR10 3081   Chr2: 2098087-2101167
Thhalv10026854m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 1796   scaffold_1: 14633159-14634954
Thhalv10026883m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 2396   scaffold_1: 17044793-17047188
Thhalv10027535m.g (1 of 1) PF14214 - Helitron helicase-like domain at N-terminus (Helitron_like_N) E. salsugineum v1.0 4549   scaffold_1: 17132774-17137322
Thhalv10027192m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 1401   scaffold_1: 20355852-20357252
Thhalv10027242m.g (1 of 5) KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins E. salsugineum v1.0 2321   scaffold_1: 17421753-17424073
Thhalv10027364m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 2530   scaffold_1: 11400661-11403190
Thhalv10027286m.g (1 of 5) KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins E. salsugineum v1.0 2358   scaffold_1: 20195661-20198018
Thhalv10023073m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 2405   scaffold_11: 66292-68696
Thhalv10002031m.g (1 of 55) PTHR23273 - REPLICATION FACTOR A 1, RFA1 E. salsugineum v1.0 2067   scaffold_12: 8121674-8123740
Thhalv10002234m.g (1 of 1) PTHR23273//PTHR23273:SF14 - REPLICATION FACTOR A 1, RFA1 E. salsugineum v1.0 999   scaffold_12: 1606830-1607828
Thhalv10002212m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 2008   scaffold_12: 7081173-7083180
Thhalv10002180m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 1941   scaffold_12: 3611115-3613055
Thhalv10002267m.g (1 of 5) KOG0851 - Single-stranded DNA-binding replication protein A (RPA), large (70 kD) subunit and related ssDNA-binding proteins E. salsugineum v1.0 3078   scaffold_12: 527809-530886
Thhalv10002301m.g (1 of 17) PF02721//PF08646 - Domain of unknown function DUF223 (DUF223) // Replication factor-A C terminal domain (Rep_fac-A_C) E. salsugineum v1.0 2013   scaffold_12: 7795651-7797663
Thhalv10028142m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 1281   scaffold_14: 2904305-2905585
Thhalv10028256m.g (1 of 1) PF08646//PF16900 - Replication factor-A C terminal domain (Rep_fac-A_C) // Replication protein A OB domain (REPA_OB_2) E. salsugineum v1.0 2130   scaffold_14: 7212949-7215078
Thhalv10000424m.g (1 of 30) PTHR23273:SF4 - REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT E. salsugineum v1.0 2350   scaffold_15: 5165577-5167926
Thhalv10000499m.g (1 of 17) PF02721//PF08646 - Domain of unknown function DUF223 (DUF223) // Replication factor-A C terminal domain (Rep_fac-A_C) E. salsugineum v1.0 2442   scaffold_15: 5372657-5375098

1000 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Tp57577_TGAC_v2_mRNA25616 T. pratense v2 123426292 retrotransposon protein, putative, unclassified, expressed 73 5275 Viridiplantae
AUR62027823-RA C. quinoa v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 154 5275 Viridiplantae
Zm00008a004495_P01 Z. mays PH207 v1.1 123426292 retrotransposon protein, putative, unclassified, expressed 317 5275 Viridiplantae
Zm00001d011546_P003 Z. mays RefGen_V4 123426292 retrotransposon protein, putative, unclassified, expressed 438 5275 Viridiplantae
29938.m000586 R. communis v0.1 123426292 retrotransposon protein, putative, unclassified, expressed 3 5275 Viridiplantae
29808.m000897 R. communis v0.1 123426292 retrotransposon protein, putative, unclassified, expressed 3 5275 Viridiplantae
29993.m001066 R. communis v0.1 123426292 retrotransposon protein, putative, unclassified, expressed 3 5275 Viridiplantae
Cucsa.212420.1 C. sativus v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 1 5275 Viridiplantae
orange1.1g044416m C. sinensis v1.1 123426292 retrotransposon protein, putative, unclassified, expressed 1 5275 Viridiplantae
AT1G36510.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT5G28780.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT3G32260.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT3G51700.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT3G51690.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT1G52950.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
AT2G05642.1 A. thaliana TAIR10 123426292 retrotransposon protein, putative, unclassified, expressed 7 5275 Viridiplantae
Thhalv10000133m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10026854m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10026883m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10027535m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10027192m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10027242m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10027364m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10027286m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10023073m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10002031m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10002234m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10002212m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10002180m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae
Thhalv10002267m E. salsugineum v1.0 123426292 retrotransposon protein, putative, unclassified, expressed 46 5275 Viridiplantae