Protein Family : LSM domain containing protein, expressed 123424585

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  202

202 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29986.t000008 (1 of 1) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM // SUBFAMILY NOT NAMED R. communis v0.1 2325   29986: 40792-43116
30170.t000772 (1 of 1) K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) R. communis v0.1 1922   30170: 4118932-4120853
Cucsa.079530 (1 of 2) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM C. sativus v1.0 4971   scaffold00793: 2378816-2383786
Cucsa.272080 (1 of 1) KOG3172 - Small nuclear ribonucleoprotein Sm D3 C. sativus v1.0 2404   scaffold02500: 775792-778195
Cucsa.274390 (1 of 2) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM C. sativus v1.0 4755   scaffold02532: 73493-78247
orange1.1g031921m.g (1 of 1) KOG3293 - Small nuclear ribonucleoprotein (snRNP) C. sinensis v1.1 2360   scaffold00149: 192696-195055
orange1.1g031941m.g (1 of 1) KOG3482 - Small nuclear ribonucleoprotein (snRNP) SMF C. sinensis v1.1 2707   scaffold00001: 5214097-5216803
orange1.1g032863m.g (1 of 1) KOG3172 - Small nuclear ribonucleoprotein Sm D3 C. sinensis v1.1 2206   scaffold00002: 4524733-4526938
AT5G27720 (1 of 1) K12623 - U6 snRNA-associated Sm-like protein LSm4 (LSM4) A. thaliana TAIR10 emb1644 2044   Chr5: 9815556-9817599
AT1G20580 (1 of 2) K11088 - small nuclear ribonucleoprotein D3 (SNRPD3, SMD3) A. thaliana TAIR10 1759   Chr1: 7128884-7130642
Thhalv10021732m.g (1 of 1) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM E. salsugineum v1.0 2560   scaffold_13: 7792743-7795302
Thhalv10009078m.g (1 of 2) KOG3172 - Small nuclear ribonucleoprotein Sm D3 E. salsugineum v1.0 1659   scaffold_5: 8415640-8417298
Thhalv10019312m.g (1 of 2) KOG3172 - Small nuclear ribonucleoprotein Sm D3 E. salsugineum v1.0 1796   scaffold_9: 1906256-1908051
Ciclev10002830m.g (1 of 1) KOG3172 - Small nuclear ribonucleoprotein Sm D3 C. clementina v1.0 2332   scaffold_5: 42664619-42666950
Ciclev10002769m.g (1 of 1) KOG3293 - Small nuclear ribonucleoprotein (snRNP) C. clementina v1.0 2395   scaffold_5: 27430780-27433174
Ciclev10022685m.g (1 of 1) KOG3428//KOG3448//KOG3482 - Small nuclear ribonucleoprotein SMD1 and related snRNPs // Predicted snRNP core protein // Small nuclear ribonucleoprotein (snRNP) SMF C. clementina v1.0 2777   scaffold_3: 45676507-45679283
Lus10016013.g (1 of 4) KOG3172 - Small nuclear ribonucleoprotein Sm D3 L. usitatissimum v1.0 1413   scaffold172: 227680-229092
Lus10012263.g (1 of 4) KOG3172 - Small nuclear ribonucleoprotein Sm D3 L. usitatissimum v1.0 1472   scaffold273: 304301-305772
Lus10013227.g (1 of 4) KOG3172 - Small nuclear ribonucleoprotein Sm D3 L. usitatissimum v1.0 1062   scaffold372: 170196-171257
Lus10030747.g (1 of 4) KOG3172 - Small nuclear ribonucleoprotein Sm D3 L. usitatissimum v1.0 1022   scaffold373: 367200-368221
Gorai.002G116800 (1 of 3) KOG3172 - Small nuclear ribonucleoprotein Sm D3 G. raimondii v2.1 1762   Chr02: 16587189-16588950
Gorai.004G052500 (1 of 1) KOG3428//KOG3448//KOG3482 - Small nuclear ribonucleoprotein SMD1 and related snRNPs // Predicted snRNP core protein // Small nuclear ribonucleoprotein (snRNP) SMF G. raimondii v2.1 2935   Chr04: 4812215-4815149
Gorai.005G113900 (1 of 3) KOG3172 - Small nuclear ribonucleoprotein Sm D3 G. raimondii v2.1 1861   Chr05: 21789699-21791559
Gorai.008G146200 (1 of 1) KOG3293 - Small nuclear ribonucleoprotein (snRNP) G. raimondii v2.1 3273   Chr08: 39888541-39891813
estExt_Genewise1.C_50176 (1 of 1) KOG3172 - Small nuclear ribonucleoprotein Sm D3 C. subellipsoidea C-169 v2.0 1262   scaffold_5: 1172273-1173534
estExt_fgenesh1_pm.C_10185 (1 of 1) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM C. subellipsoidea C-169 v2.0 1850   scaffold_1: 2498330-2500179
gw1.2.483.1 (1 of 3) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM M. pusilla CCMP1545 v3.0 541   scaffold_2: 2050432-2050972
estExt_fgenesh3_kg.C_60031 (1 of 3) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM M. pusilla CCMP1545 v3.0 981   scaffold_6: 500043-501023
e_gw2.08.564.1 (1 of 3) PTHR23338 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM M. sp RCC299 v3.0 576   Chr_08: 641659-642234
e_gw2.04.709.1 (1 of 1) PTHR23338//PTHR23338:SF24 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM M. sp RCC299 v3.0 372   Chr_04: 1093755-1094126

202 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
29986.m001592 R. communis v0.1 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
30170.m014360 R. communis v0.1 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
Cucsa.272080.1 C. sativus v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Cucsa.274390.1 C. sativus v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Cucsa.079530.1 C. sativus v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
orange1.1g031941m C. sinensis v1.1 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
orange1.1g032863m C. sinensis v1.1 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
orange1.1g031921m C. sinensis v1.1 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
AT5G27720.1 A. thaliana TAIR10 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
AT1G20580.1 A. thaliana TAIR10 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
Thhalv10009078m E. salsugineum v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Thhalv10021732m E. salsugineum v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Thhalv10019312m E. salsugineum v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Ciclev10002830m C. clementina v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Ciclev10022685m C. clementina v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Ciclev10002769m C. clementina v1.0 123424585 LSM domain containing protein, expressed 3 5275 Viridiplantae
Lus10030747 L. usitatissimum v1.0 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Lus10016013 L. usitatissimum v1.0 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Lus10012263 L. usitatissimum v1.0 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Lus10013227 L. usitatissimum v1.0 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.005G113900.1 G. raimondii v2.1 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.008G146200.1 G. raimondii v2.1 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.002G116800.1 G. raimondii v2.1 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
Gorai.004G052500.1 G. raimondii v2.1 123424585 LSM domain containing protein, expressed 4 5275 Viridiplantae
22901 C. subellipsoidea C-169 v2.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
52189 C. subellipsoidea C-169 v2.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
125301 M. pusilla CCMP1545 v3.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
133455 M. pusilla CCMP1545 v3.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
84175 M. sp RCC299 v3.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae
80773 M. sp RCC299 v3.0 123424585 LSM domain containing protein, expressed 2 5275 Viridiplantae