Protein Family : RNA polymerase Rpb1, domain 2 family protein, expressed 123381031

Method ID:  5275 Method Name:  Viridiplantae
Sequence Alignment:  View MSA Member Count:  153

153 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
441655 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 S. moellendorffii v1.0 5677   scaffold_18: 461443-467119
30131.t000348 (1 of 1) K16251 - DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] (NRPE1) R. communis v0.1 5558   30131: 2163452-2169009
30190.t000349 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) R. communis v0.1 13622   30190: 1916062-1929683
Cucsa.330520 (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 C. sativus v1.0 24549   scaffold03223: 37137-61685
Cucsa.041530 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. sativus v1.0 13005   scaffold00540: 71891-84895
orange1.1g000525m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. sinensis v1.1 14431   scaffold00040: 317155-331585
orange1.1g000291m.g (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 C. sinensis v1.1 13079   scaffold00139: 323616-336694
AT1G63020 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) A. thaliana TAIR10 NRPD1A 7880   Chr1: 23354685-23362564
AT2G40030 (1 of 1) K16251 - DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] (NRPE1) A. thaliana TAIR10 NRPD1B 9090   Chr2: 16714494-16723583
Thhalv10016128m.g (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 E. salsugineum v1.0 8985   scaffold_10: 10564804-10573788
Thhalv10023214m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 E. salsugineum v1.0 5954   scaffold_8: 1266290-1272243
Ciclev10018489m.g (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. clementina v1.0 13662   scaffold_3: 6765569-6779230
Ciclev10004129m.g (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 C. clementina v1.0 13345   scaffold_9: 12212755-12226099
Lus10006339.g (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 L. usitatissimum v1.0 6324   scaffold1072: 190246-196569
Lus10002748.g (1 of 1) PF00623//PF04983//PF04997//PF04998//PF11523 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // Protein of unknown function (DUF3223) (DUF3223) L. usitatissimum v1.0 10441   scaffold2896: 60656-71096
Lus10002955.g (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 L. usitatissimum v1.0 6286   scaffold2416: 4372-10657
Lus10016332.g (1 of 1) PF04983//PF04998//PF11523 - RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // Protein of unknown function (DUF3223) (DUF3223) L. usitatissimum v1.0 6563   scaffold179: 74030-80592
Gorai.004G207300 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. raimondii v2.1 11905   Chr04: 53813408-53825312
Gorai.010G216600 (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 G. raimondii v2.1 15584   Chr10: 58463706-58479289
Gorai.007G022200 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. raimondii v2.1 7465   Chr07: 1605147-1612611
Thecc1EG045152 (1 of 1) K16251 - DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6] (NRPE1) T. cacao v1.1 20121   scaffold_10r: 22643178-22663298
Thecc1EG016168 (1 of 1) K16250 - DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6] (NRPD1) T. cacao v1.1 15714   scaffold_3: 31623992-31639705
Migut.A00916 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 M. guttatus v2.0 8761   scaffold_1: 5633177-5641937
Migut.B01227 (1 of 1) PTHR19376:SF7 - DNA-DIRECTED RNA POLYMERASE M. guttatus v2.0 14110   scaffold_2: 14473813-14487922
Araha.27262s0001 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 A. halleri v1.1 7614   Scaffold27262: 1348-8961
Araha.54531s0001 (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 A. halleri v1.1 7904   Scaffold54531: 3-7906
Cagra.2495s0018 (1 of 1) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 C. grandiflora v1.1 9007   Scaffold2495: 62460-71466
Cagra.6357s0008 (1 of 1) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 C. grandiflora v1.1 7289   Scaffold6357: 35116-42404
Glyma.11G026700 (1 of 2) PTHR19376:SF40 - DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 G. max Wm82.a2.v1 14510   Chr11: 1908384-1922893
Glyma.13G196900 (1 of 2) PTHR19376:SF36 - DNA-DIRECTED RNA POLYMERASE V SUBUNIT 1 G. max Wm82.a2.v1 16623   Chr13: 31055891-31072513

153 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
441655 S. moellendorffii v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 1 5275 Viridiplantae
30190.m011113 R. communis v0.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
30131.m007197 R. communis v0.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Cucsa.330520.1 C. sativus v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Cucsa.041530.1 C. sativus v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
orange1.1g000291m C. sinensis v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
orange1.1g000525m C. sinensis v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
AT1G63020.1 A. thaliana TAIR10 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
AT2G40030.1 A. thaliana TAIR10 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Thhalv10016128m E. salsugineum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Thhalv10023214m E. salsugineum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Ciclev10004129m C. clementina v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Ciclev10018489m C. clementina v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Lus10006339 L. usitatissimum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae
Lus10002955 L. usitatissimum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae
Lus10016332 L. usitatissimum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae
Lus10002748 L. usitatissimum v1.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae
Gorai.010G216600.1 G. raimondii v2.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 3 5275 Viridiplantae
Gorai.004G207300.1 G. raimondii v2.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 3 5275 Viridiplantae
Gorai.007G022200.1 G. raimondii v2.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 3 5275 Viridiplantae
Thecc1EG016168t1 T. cacao v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Thecc1EG045152t2 T. cacao v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Migut.A00916.1.p M. guttatus v2.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Migut.B01227.1.p M. guttatus v2.0 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Araha.27262s0001.1.p A. halleri v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Araha.54531s0001.1.p A. halleri v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Cagra.6357s0008.1.p C. grandiflora v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Cagra.2495s0018.1.p C. grandiflora v1.1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 2 5275 Viridiplantae
Glyma.01G215700.1.p G. max Wm82.a2.v1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae
Glyma.11G026700.1.p G. max Wm82.a2.v1 123381031 RNA polymerase Rpb1, domain 2 family protein, expressed 4 5275 Viridiplantae