Protein Family : RNA recognition motif containing protein, putative, expressed 121349812

Method ID:  5274 Method Name:  Embryophyte
Sequence Alignment:  View MSA Member Count:  384

384 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
30008.t000019 (1 of 18) KOG0131 - Splicing factor 3b, subunit 4 R. communis v0.1 2038   30008: 96600-98637
30078.t000116 (1 of 3) K11294 - nucleolin (NCL, NSR1) R. communis v0.1 2612   30078: 746713-749324
30147.t000106 (1 of 3) K11294 - nucleolin (NCL, NSR1) R. communis v0.1 2658   30147: 2868188-2870845
Cucsa.050070 (1 of 163) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) C. sativus v1.0 2619   scaffold00551: 202030-204648
Cucsa.196330 (1 of 15) KOG0131 - Splicing factor 3b, subunit 4 C. sativus v1.0 2619   scaffold01357: 65769-68387
Cucsa.241970 (1 of 15) KOG0131 - Splicing factor 3b, subunit 4 C. sativus v1.0 2146   scaffold02047: 1821824-1823969
Cucsa.255820 (1 of 15) KOG0131 - Splicing factor 3b, subunit 4 C. sativus v1.0 2819   scaffold02229: 3642427-3645245
Cucsa.306870 (1 of 15) KOG0131 - Splicing factor 3b, subunit 4 C. sativus v1.0 2100   scaffold02977: 262354-264453
orange1.1g017842m.g (1 of 3) PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) C. sinensis v1.1 3369   scaffold00020: 348263-351631
orange1.1g020607m.g (1 of 23) KOG0131 - Splicing factor 3b, subunit 4 C. sinensis v1.1 1969   scaffold00018: 829028-830996
AT4G24770 (1 of 28) KOG0131 - Splicing factor 3b, subunit 4 A. thaliana TAIR10 RBP31 2011   Chr4: 12766030-12768040
AT5G50250 (1 of 28) KOG0131 - Splicing factor 3b, subunit 4 A. thaliana TAIR10 CP31B 1527   Chr5: 20452487-20454013
AT3G53460 (1 of 1) KOG0131//KOG0144 - Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) A. thaliana TAIR10 CP29 2335   Chr3: 19819185-19821519
AT3G52380 (1 of 28) KOG0131 - Splicing factor 3b, subunit 4 A. thaliana TAIR10 CP33 1701   Chr3: 19421397-19423097
AT1G60000 (1 of 2) 2.3.1.1//2.3.1.35 - Amino-acid N-acetyltransferase / N-acetylglutamate synthase // Glutamate N-acetyltransferase / Ornithine transacetylase A. thaliana TAIR10 1058   Chr1: 22093569-22094626
AT2G37220 (1 of 3) K11294 - nucleolin (NCL, NSR1) A. thaliana TAIR10 1885   Chr2: 15634525-15636409
Thhalv10025809m.g (1 of 22) KOG0131 - Splicing factor 3b, subunit 4 E. salsugineum v1.0 2108   scaffold_1: 6502679-6504786
Thhalv10017023m.g (1 of 1) KOG0114//KOG0131//KOG0144//KOG4210 - Predicted RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) // Nuclear localization sequence binding protein E. salsugineum v1.0 1914   scaffold_10: 9118388-9120301
Thhalv10010545m.g (1 of 1) KOG0121//KOG0131//KOG0144 - Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) // Splicing factor 3b, subunit 4 // RNA-binding protein CUGBP1/BRUNO (RRM superfamily) E. salsugineum v1.0 2135   scaffold_16: 1075766-1077900
Thhalv10010548m.g (1 of 22) KOG0131 - Splicing factor 3b, subunit 4 E. salsugineum v1.0 1485   scaffold_16: 1578186-1579670
Thhalv10023650m.g (1 of 22) KOG0131 - Splicing factor 3b, subunit 4 E. salsugineum v1.0 1008   scaffold_8: 4646654-4647661
Ciclev10012331m.g (1 of 24) KOG0131 - Splicing factor 3b, subunit 4 C. clementina v1.0 2398   scaffold_6: 10082734-10085131
Ciclev10012204m.g (1 of 24) KOG0131 - Splicing factor 3b, subunit 4 C. clementina v1.0 2116   scaffold_6: 19745966-19748081
Ciclev10020731m.g (1 of 2) PF00076//PF14259 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) (RRM_6) C. clementina v1.0 3108   scaffold_3: 3802387-3805494
Ciclev10005487m.g (1 of 24) KOG0131 - Splicing factor 3b, subunit 4 C. clementina v1.0 3560   scaffold_9: 6896163-6899722
Lus10041952.g (1 of 37) KOG0131 - Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1544   scaffold123: 97387-98930
Lus10023191.g (1 of 1) KOG0105//KOG0106//KOG0110//KOG0131 - Alternative splicing factor ASF/SF2 (RRM superfamily) // Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1447   scaffold325: 865961-867407
Lus10029372.g (1 of 37) KOG0131 - Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1371   scaffold360: 875818-877188
Lus10002222.g (1 of 37) KOG0131 - Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1400   scaffold499: 62332-63731
Lus10023723.g (1 of 3) KOG0106//KOG0131 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // Splicing factor 3b, subunit 4 L. usitatissimum v1.0 1757   scaffold505: 791857-793613

384 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
30078.m002323 R. communis v0.1 121349812 RNA recognition motif containing protein, putative, expressed 3 5274 Embryophyte
30008.m000803 R. communis v0.1 121349812 RNA recognition motif containing protein, putative, expressed 3 5274 Embryophyte
30147.m013835 R. communis v0.1 121349812 RNA recognition motif containing protein, putative, expressed 3 5274 Embryophyte
Cucsa.306870.1 C. sativus v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Cucsa.050070.1 C. sativus v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Cucsa.196330.1 C. sativus v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Cucsa.241970.1 C. sativus v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Cucsa.255820.1 C. sativus v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
orange1.1g017842m C. sinensis v1.1 121349812 RNA recognition motif containing protein, putative, expressed 2 5274 Embryophyte
orange1.1g020607m C. sinensis v1.1 121349812 RNA recognition motif containing protein, putative, expressed 2 5274 Embryophyte
AT2G37220.1 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
AT4G24770.1 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
AT5G50250.1 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
AT3G52380.1 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
AT3G53460.4 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
AT1G60000.1 A. thaliana TAIR10 121349812 RNA recognition motif containing protein, putative, expressed 6 5274 Embryophyte
Thhalv10010548m E. salsugineum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Thhalv10025809m E. salsugineum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Thhalv10017023m E. salsugineum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Thhalv10010545m E. salsugineum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Thhalv10023650m E. salsugineum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 5 5274 Embryophyte
Ciclev10020731m C. clementina v1.0 121349812 RNA recognition motif containing protein, putative, expressed 4 5274 Embryophyte
Ciclev10012204m C. clementina v1.0 121349812 RNA recognition motif containing protein, putative, expressed 4 5274 Embryophyte
Ciclev10012331m C. clementina v1.0 121349812 RNA recognition motif containing protein, putative, expressed 4 5274 Embryophyte
Ciclev10005487m C. clementina v1.0 121349812 RNA recognition motif containing protein, putative, expressed 4 5274 Embryophyte
Lus10017962 L. usitatissimum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 8 5274 Embryophyte
Lus10041952 L. usitatissimum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 8 5274 Embryophyte
Lus10023191 L. usitatissimum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 8 5274 Embryophyte
Lus10029372 L. usitatissimum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 8 5274 Embryophyte
Lus10002222 L. usitatissimum v1.0 121349812 RNA recognition motif containing protein, putative, expressed 8 5274 Embryophyte