GO Term : GO:0000404 heteroduplex DNA loop binding GO

Namespace:  molecular_function Obsolete:  false
description  Interacting selectively and non-covalently with DNA containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

12 Parents

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0030983 mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
GO:0003674 molecular_function Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
GO:1901363 heterocyclic compound binding Interacting selectively and non-covalently with heterocyclic compound.
GO:0097159 organic cyclic compound binding Interacting selectively and non-covalently with an organic cyclic compound, any molecular entity that contains carbon arranged in a cyclic molecular structure.
GO:0043566 structure-specific DNA binding Interacting selectively and non-covalently with DNA of a specific structure or configuration e.g. triplex DNA binding or bent DNA binding.
GO:0000217 DNA secondary structure binding Interacting selectively and non-covalently with DNA containing secondary structure elements such as four-way junctions, bubbles, loops, Y-form DNA, or double-strand/single-strand junctions.
GO:0000404 heteroduplex DNA loop binding Interacting selectively and non-covalently with DNA containing a loop. A loop occurs when DNA contains a large insertion or deletion that causes a region of unpaired single-stranded DNA to loop out, while the rest of the DNA is in a paired double-stranded configuration.
GO:0032135 DNA insertion or deletion binding Interacting selectively and non-covalently with double-stranded DNA containing insertions or deletions.

11 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0000217 GO:0000404
is_a GO:0032135 GO:0000404
is_a GO:1901363 GO:0000404
is_a GO:0097159 GO:0000404
is_a GO:0003690 GO:0000404
is_a GO:0030983 GO:0000404
is_a GO:0005488 GO:0000404
is_a GO:0043566 GO:0000404
is_a GO:0003674 GO:0000404
is_a GO:0003677 GO:0000404
is_a GO:0003676 GO:0000404

1 Synonyms

Name Type
loop DNA binding synonym