Gene : evm_27.TU.AmTr_v1.0_scaffold00112.21 A. trichopoda v1.0
Defline:  (1 of 1) PTHR32098:SF5 - LYCOPENE BETA/EPSILON CYCLASE PROTEIN Genomic Order:  20
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00112.21 Secondary Identifier:  ? PAC:31554594
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Atrichopoda CAROTENOID-PWY Amborella trichopoda pathologic  
Atrichopoda PWY-5943 Amborella trichopoda pathologic  
Atrichopoda PWY-5947 Amborella trichopoda pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00112.21 0.5kb upstream 0.5kb upstream 46318 true AmTr_v1.0_scaffold00112: 990488-1036805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00112: 990488-990987 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 0.5kb downstream 0.5kb downstream 46318 true AmTr_v1.0_scaffold00112: 990988-1037305 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00112: 1036806-1037305 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 1.0kb upstream 1.0kb upstream 46818 true AmTr_v1.0_scaffold00112: 989988-1036805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00112: 989988-990987 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 1.0kb downstream 1.0kb downstream 46818 true AmTr_v1.0_scaffold00112: 990988-1037805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00112: 1036806-1037805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 2.0kb upstream 2.0kb upstream 47818 true AmTr_v1.0_scaffold00112: 988988-1036805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00112: 988988-990987 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 2.0kb downstream 2.0kb downstream 47818 true AmTr_v1.0_scaffold00112: 990988-1038805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00112: 1036806-1038805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 5.0kb upstream 5.0kb upstream 50818 true AmTr_v1.0_scaffold00112: 985988-1036805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00112: 985988-990987 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 5.0kb downstream 5.0kb downstream 50818 true AmTr_v1.0_scaffold00112: 990988-1041805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00112: 1036806-1041805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 10.0kb upstream 10.0kb upstream 55818 true AmTr_v1.0_scaffold00112: 980988-1036805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00112: 980988-990987 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 10.0kb downstream 10.0kb downstream 55818 true AmTr_v1.0_scaffold00112: 990988-1046805 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00112.21 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00112: 1036806-1046805 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122042056 5273 Angiosperm View MSA
121350076 5274 Embryophyte View MSA
123425500 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain