Gene : evm_27.TU.AmTr_v1.0_scaffold00030.138 A. trichopoda v1.0
Defline:  (1 of 1) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Genomic Order:  137
Name:  ? evm_27.TU.AmTr_v1.0_scaffold00030.138 Secondary Identifier:  ? PAC:31556582
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
evm_27.TU.AmTr_v1.0_scaffold00030.138 0.5kb upstream 0.5kb upstream 25857 true AmTr_v1.0_scaffold00030: 3691792-3717648 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 0.5kb upstream 0.5kb upstream 500 false AmTr_v1.0_scaffold00030: 3717149-3717648 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 0.5kb downstream 0.5kb downstream 25857 true AmTr_v1.0_scaffold00030: 3691292-3717148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 0.5kb downstream 0.5kb downstream 500 false AmTr_v1.0_scaffold00030: 3691292-3691791 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 1.0kb upstream 1.0kb upstream 26357 true AmTr_v1.0_scaffold00030: 3691792-3718148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 1.0kb upstream 1.0kb upstream 1000 false AmTr_v1.0_scaffold00030: 3717149-3718148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 1.0kb downstream 1.0kb downstream 26357 true AmTr_v1.0_scaffold00030: 3690792-3717148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 1.0kb downstream 1.0kb downstream 1000 false AmTr_v1.0_scaffold00030: 3690792-3691791 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 2.0kb upstream 2.0kb upstream 27357 true AmTr_v1.0_scaffold00030: 3691792-3719148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 2.0kb upstream 2.0kb upstream 2000 false AmTr_v1.0_scaffold00030: 3717149-3719148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 2.0kb downstream 2.0kb downstream 27357 true AmTr_v1.0_scaffold00030: 3689792-3717148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 2.0kb downstream 2.0kb downstream 2000 false AmTr_v1.0_scaffold00030: 3689792-3691791 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 5.0kb upstream 5.0kb upstream 30357 true AmTr_v1.0_scaffold00030: 3691792-3722148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 5.0kb upstream 5.0kb upstream 5000 false AmTr_v1.0_scaffold00030: 3717149-3722148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 5.0kb downstream 5.0kb downstream 30357 true AmTr_v1.0_scaffold00030: 3686792-3717148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 5.0kb downstream 5.0kb downstream 5000 false AmTr_v1.0_scaffold00030: 3686792-3691791 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 10.0kb upstream 10.0kb upstream 35357 true AmTr_v1.0_scaffold00030: 3691792-3727148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 10.0kb upstream 10.0kb upstream 10000 false AmTr_v1.0_scaffold00030: 3717149-3727148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 10.0kb downstream 10.0kb downstream 35357 true AmTr_v1.0_scaffold00030: 3681792-3717148 Amborella trichopoda
evm_27.TU.AmTr_v1.0_scaffold00030.138 10.0kb downstream 10.0kb downstream 10000 false AmTr_v1.0_scaffold00030: 3681792-3691791 Amborella trichopoda

3 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

0 Rna Seq Expressions

0 Strain