Gene : Medtr0308s0020 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  2 Name:  ? Medtr0308s0020
Secondary Identifier:  ? PAC:31101084
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0308s0020 0.5kb upstream 0.5kb upstream 2126 true scaffold0308: 7316-9441 Medicago truncatula
Medtr0308s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0308: 7316-7815 Medicago truncatula
Medtr0308s0020 0.5kb downstream 0.5kb downstream 2126 true scaffold0308: 7816-9941 Medicago truncatula
Medtr0308s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0308: 9442-9941 Medicago truncatula
Medtr0308s0020 1.0kb upstream 1.0kb upstream 2626 true scaffold0308: 6816-9441 Medicago truncatula
Medtr0308s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0308: 6816-7815 Medicago truncatula
Medtr0308s0020 1.0kb downstream 1.0kb downstream 2626 true scaffold0308: 7816-10441 Medicago truncatula
Medtr0308s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0308: 9442-10441 Medicago truncatula
Medtr0308s0020 2.0kb upstream 2.0kb upstream 3626 true scaffold0308: 5816-9441 Medicago truncatula
Medtr0308s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0308: 5816-7815 Medicago truncatula
Medtr0308s0020 2.0kb downstream 2.0kb downstream 3626 true scaffold0308: 7816-11441 Medicago truncatula
Medtr0308s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0308: 9442-11441 Medicago truncatula
Medtr0308s0020 5.0kb upstream 5.0kb upstream 6626 true scaffold0308: 2816-9441 Medicago truncatula
Medtr0308s0020 5.0kb upstream 5.0kb upstream 5000 false scaffold0308: 2816-7815 Medicago truncatula
Medtr0308s0020 5.0kb downstream 5.0kb downstream 6626 true scaffold0308: 7816-14441 Medicago truncatula
Medtr0308s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0308: 9442-14441 Medicago truncatula
Medtr0308s0020 10.0kb upstream 10.0kb upstream 9441 true scaffold0308: 1-9441 Medicago truncatula
Medtr0308s0020 10.0kb upstream 10.0kb upstream 7815 false scaffold0308: 1-7815 Medicago truncatula
Medtr0308s0020 10.0kb downstream 10.0kb downstream 11626 true scaffold0308: 7816-19441 Medicago truncatula
Medtr0308s0020 10.0kb downstream 10.0kb downstream 10000 false scaffold0308: 9442-19441 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.266        
cufflinks 0.583        
cufflinks 0.655        
cufflinks 0.044     Low Low
cufflinks 0.871        
cufflinks 0.856        
cufflinks 0.201        
cufflinks 0.416        
cufflinks 0.082     Low Low

0 Strain