Gene : Medtr0177s0060 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  2 Name:  ? Medtr0177s0060
Secondary Identifier:  ? PAC:31105975
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0177s0060 0.5kb upstream 0.5kb upstream 2242 true scaffold0177: 25579-27820 Medicago truncatula
Medtr0177s0060 0.5kb upstream 0.5kb upstream 500 false scaffold0177: 25579-26078 Medicago truncatula
Medtr0177s0060 0.5kb downstream 0.5kb downstream 2242 true scaffold0177: 26079-28320 Medicago truncatula
Medtr0177s0060 0.5kb downstream 0.5kb downstream 500 false scaffold0177: 27821-28320 Medicago truncatula
Medtr0177s0060 1.0kb upstream 1.0kb upstream 2742 true scaffold0177: 25079-27820 Medicago truncatula
Medtr0177s0060 1.0kb upstream 1.0kb upstream 1000 false scaffold0177: 25079-26078 Medicago truncatula
Medtr0177s0060 1.0kb downstream 1.0kb downstream 2742 true scaffold0177: 26079-28820 Medicago truncatula
Medtr0177s0060 1.0kb downstream 1.0kb downstream 1000 false scaffold0177: 27821-28820 Medicago truncatula
Medtr0177s0060 2.0kb upstream 2.0kb upstream 3742 true scaffold0177: 24079-27820 Medicago truncatula
Medtr0177s0060 2.0kb upstream 2.0kb upstream 2000 false scaffold0177: 24079-26078 Medicago truncatula
Medtr0177s0060 2.0kb downstream 2.0kb downstream 3742 true scaffold0177: 26079-29820 Medicago truncatula
Medtr0177s0060 2.0kb downstream 2.0kb downstream 2000 false scaffold0177: 27821-29820 Medicago truncatula
Medtr0177s0060 5.0kb upstream 5.0kb upstream 6742 true scaffold0177: 21079-27820 Medicago truncatula
Medtr0177s0060 5.0kb upstream 5.0kb upstream 5000 false scaffold0177: 21079-26078 Medicago truncatula
Medtr0177s0060 5.0kb downstream 5.0kb downstream 6742 true scaffold0177: 26079-32820 Medicago truncatula
Medtr0177s0060 5.0kb downstream 5.0kb downstream 5000 false scaffold0177: 27821-32820 Medicago truncatula
Medtr0177s0060 10.0kb upstream 10.0kb upstream 11742 true scaffold0177: 16079-27820 Medicago truncatula
Medtr0177s0060 10.0kb upstream 10.0kb upstream 10000 false scaffold0177: 16079-26078 Medicago truncatula
Medtr0177s0060 10.0kb downstream 10.0kb downstream 9089 true scaffold0177: 26079-35167 Medicago truncatula
Medtr0177s0060 10.0kb downstream 10.0kb downstream 7347 false scaffold0177: 27821-35167 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.718       High
cufflinks 0.371        
cufflinks 0.596        
cufflinks 0.04     Low Low
cufflinks 0.526        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.187        
cufflinks 0.271        
cufflinks 0.153        

0 Strain