Gene : Medtr0572s0010 M. truncatula Mt4.0v1
Defline:  (1 of 34) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  1 Name:  ? Medtr0572s0010
Secondary Identifier:  ? PAC:31092141
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0572s0010 0.5kb upstream 0.5kb upstream 2152 true scaffold0572: 1528-3679 Medicago truncatula
Medtr0572s0010 0.5kb upstream 0.5kb upstream 500 false scaffold0572: 1528-2027 Medicago truncatula
Medtr0572s0010 0.5kb downstream 0.5kb downstream 2152 true scaffold0572: 2028-4179 Medicago truncatula
Medtr0572s0010 0.5kb downstream 0.5kb downstream 500 false scaffold0572: 3680-4179 Medicago truncatula
Medtr0572s0010 1.0kb upstream 1.0kb upstream 2652 true scaffold0572: 1028-3679 Medicago truncatula
Medtr0572s0010 1.0kb upstream 1.0kb upstream 1000 false scaffold0572: 1028-2027 Medicago truncatula
Medtr0572s0010 1.0kb downstream 1.0kb downstream 2652 true scaffold0572: 2028-4679 Medicago truncatula
Medtr0572s0010 1.0kb downstream 1.0kb downstream 1000 false scaffold0572: 3680-4679 Medicago truncatula
Medtr0572s0010 2.0kb upstream 2.0kb upstream 3652 true scaffold0572: 28-3679 Medicago truncatula
Medtr0572s0010 2.0kb upstream 2.0kb upstream 2000 false scaffold0572: 28-2027 Medicago truncatula
Medtr0572s0010 2.0kb downstream 2.0kb downstream 3652 true scaffold0572: 2028-5679 Medicago truncatula
Medtr0572s0010 2.0kb downstream 2.0kb downstream 2000 false scaffold0572: 3680-5679 Medicago truncatula
Medtr0572s0010 5.0kb upstream 5.0kb upstream 3679 true scaffold0572: 1-3679 Medicago truncatula
Medtr0572s0010 5.0kb upstream 5.0kb upstream 2027 false scaffold0572: 1-2027 Medicago truncatula
Medtr0572s0010 5.0kb downstream 5.0kb downstream 6652 true scaffold0572: 2028-8679 Medicago truncatula
Medtr0572s0010 5.0kb downstream 5.0kb downstream 5000 false scaffold0572: 3680-8679 Medicago truncatula
Medtr0572s0010 10.0kb upstream 10.0kb upstream 3679 true scaffold0572: 1-3679 Medicago truncatula
Medtr0572s0010 10.0kb upstream 10.0kb upstream 2027 false scaffold0572: 1-2027 Medicago truncatula
Medtr0572s0010 10.0kb downstream 10.0kb downstream 8700 true scaffold0572: 2028-10727 Medicago truncatula
Medtr0572s0010 10.0kb downstream 10.0kb downstream 7048 false scaffold0572: 3680-10727 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.997        
cufflinks 0.964        
cufflinks 1.258        
cufflinks 0.13       Low
cufflinks 1.396       High
cufflinks 0.185        
cufflinks 0.234        
cufflinks 0.822        
cufflinks 0.088     Low Low

0 Strain