Gene : Medtr0429s0020 M. truncatula Mt4.0v1
Defline:  (1 of 34) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  1 Name:  ? Medtr0429s0020
Secondary Identifier:  ? PAC:31061679
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0429s0020 0.5kb upstream 0.5kb upstream 3455 true scaffold0429: 4391-7845 Medicago truncatula
Medtr0429s0020 0.5kb upstream 0.5kb upstream 500 false scaffold0429: 4391-4890 Medicago truncatula
Medtr0429s0020 0.5kb downstream 0.5kb downstream 3455 true scaffold0429: 4891-8345 Medicago truncatula
Medtr0429s0020 0.5kb downstream 0.5kb downstream 500 false scaffold0429: 7846-8345 Medicago truncatula
Medtr0429s0020 1.0kb upstream 1.0kb upstream 3955 true scaffold0429: 3891-7845 Medicago truncatula
Medtr0429s0020 1.0kb upstream 1.0kb upstream 1000 false scaffold0429: 3891-4890 Medicago truncatula
Medtr0429s0020 1.0kb downstream 1.0kb downstream 3955 true scaffold0429: 4891-8845 Medicago truncatula
Medtr0429s0020 1.0kb downstream 1.0kb downstream 1000 false scaffold0429: 7846-8845 Medicago truncatula
Medtr0429s0020 2.0kb upstream 2.0kb upstream 4955 true scaffold0429: 2891-7845 Medicago truncatula
Medtr0429s0020 2.0kb upstream 2.0kb upstream 2000 false scaffold0429: 2891-4890 Medicago truncatula
Medtr0429s0020 2.0kb downstream 2.0kb downstream 4955 true scaffold0429: 4891-9845 Medicago truncatula
Medtr0429s0020 2.0kb downstream 2.0kb downstream 2000 false scaffold0429: 7846-9845 Medicago truncatula
Medtr0429s0020 5.0kb upstream 5.0kb upstream 7845 true scaffold0429: 1-7845 Medicago truncatula
Medtr0429s0020 5.0kb upstream 5.0kb upstream 4890 false scaffold0429: 1-4890 Medicago truncatula
Medtr0429s0020 5.0kb downstream 5.0kb downstream 7955 true scaffold0429: 4891-12845 Medicago truncatula
Medtr0429s0020 5.0kb downstream 5.0kb downstream 5000 false scaffold0429: 7846-12845 Medicago truncatula
Medtr0429s0020 10.0kb upstream 10.0kb upstream 7845 true scaffold0429: 1-7845 Medicago truncatula
Medtr0429s0020 10.0kb upstream 10.0kb upstream 4890 false scaffold0429: 1-4890 Medicago truncatula
Medtr0429s0020 10.0kb downstream 10.0kb downstream 10405 true scaffold0429: 4891-15295 Medicago truncatula
Medtr0429s0020 10.0kb downstream 10.0kb downstream 7450 false scaffold0429: 7846-15295 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.719        
cufflinks 0.833        
cufflinks 0.982        
cufflinks 0.159       Low
cufflinks 1.586       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.228        
cufflinks 0.865        
cufflinks 0.135       Low

0 Strain