Gene : Medtr0014s0210 M. truncatula Mt4.0v1
Defline:  (1 of 599) PF13041 - PPR repeat family (PPR_2) Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  9 Name:  ? Medtr0014s0210
Secondary Identifier:  ? PAC:31069322
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0014s0210 0.5kb upstream 0.5kb upstream 2154   true scaffold0014: 120973-123126 Medicago truncatula
Medtr0014s0210 0.5kb upstream 0.5kb upstream 500   false scaffold0014: 122627-123126 Medicago truncatula
Medtr0014s0210 0.5kb downstream 0.5kb downstream 2154   true scaffold0014: 120473-122626 Medicago truncatula
Medtr0014s0210 0.5kb downstream 0.5kb downstream 500   false scaffold0014: 120473-120972 Medicago truncatula
Medtr0014s0210 1.0kb upstream 1.0kb upstream 2654   true scaffold0014: 120973-123626 Medicago truncatula
Medtr0014s0210 1.0kb upstream 1.0kb upstream 1000   false scaffold0014: 122627-123626 Medicago truncatula
Medtr0014s0210 1.0kb downstream 1.0kb downstream 2654   true scaffold0014: 119973-122626 Medicago truncatula
Medtr0014s0210 1.0kb downstream 1.0kb downstream 1000   false scaffold0014: 119973-120972 Medicago truncatula
Medtr0014s0210 2.0kb upstream 2.0kb upstream 3654   true scaffold0014: 120973-124626 Medicago truncatula
Medtr0014s0210 2.0kb upstream 2.0kb upstream 2000   false scaffold0014: 122627-124626 Medicago truncatula
Medtr0014s0210 2.0kb downstream 2.0kb downstream 3654   true scaffold0014: 118973-122626 Medicago truncatula
Medtr0014s0210 2.0kb downstream 2.0kb downstream 2000   false scaffold0014: 118973-120972 Medicago truncatula
Medtr0014s0210 5.0kb upstream 5.0kb upstream 6654   true scaffold0014: 120973-127626 Medicago truncatula
Medtr0014s0210 5.0kb upstream 5.0kb upstream 5000   false scaffold0014: 122627-127626 Medicago truncatula
Medtr0014s0210 5.0kb downstream 5.0kb downstream 6654   true scaffold0014: 115973-122626 Medicago truncatula
Medtr0014s0210 5.0kb downstream 5.0kb downstream 5000   false scaffold0014: 115973-120972 Medicago truncatula
Medtr0014s0210 10.0kb upstream 10.0kb upstream 11654   true scaffold0014: 120973-132626 Medicago truncatula
Medtr0014s0210 10.0kb upstream 10.0kb upstream 10000   false scaffold0014: 122627-132626 Medicago truncatula
Medtr0014s0210 10.0kb downstream 10.0kb downstream 11654   true scaffold0014: 110973-122626 Medicago truncatula
Medtr0014s0210 10.0kb downstream 10.0kb downstream 10000   false scaffold0014: 110973-120972 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.14        
cufflinks 1.225        
cufflinks 1.745        
cufflinks 0.761        
cufflinks 2.334       High
cufflinks 1.509        
cufflinks 0.769        
cufflinks 1.395        
cufflinks 0.394       Low

0 Strain