Gene : Medtr0071s0030 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR12811 - VACUOLAR PROTEIN SORTING VPS16 Description:  vacuolar protein sorting-associated-like protein
Genomic Order:  2 Name:  ? Medtr0071s0030
Secondary Identifier:  ? PAC:31106185
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr0071s0030 0.5kb upstream 0.5kb upstream 14096   true scaffold0071: 16992-31087 Medicago truncatula
Medtr0071s0030 0.5kb upstream 0.5kb upstream 500   false scaffold0071: 16992-17491 Medicago truncatula
Medtr0071s0030 0.5kb downstream 0.5kb downstream 14096   true scaffold0071: 17492-31587 Medicago truncatula
Medtr0071s0030 0.5kb downstream 0.5kb downstream 500   false scaffold0071: 31088-31587 Medicago truncatula
Medtr0071s0030 1.0kb upstream 1.0kb upstream 14596   true scaffold0071: 16492-31087 Medicago truncatula
Medtr0071s0030 1.0kb upstream 1.0kb upstream 1000   false scaffold0071: 16492-17491 Medicago truncatula
Medtr0071s0030 1.0kb downstream 1.0kb downstream 14596   true scaffold0071: 17492-32087 Medicago truncatula
Medtr0071s0030 1.0kb downstream 1.0kb downstream 1000   false scaffold0071: 31088-32087 Medicago truncatula
Medtr0071s0030 2.0kb upstream 2.0kb upstream 15596   true scaffold0071: 15492-31087 Medicago truncatula
Medtr0071s0030 2.0kb upstream 2.0kb upstream 2000   false scaffold0071: 15492-17491 Medicago truncatula
Medtr0071s0030 2.0kb downstream 2.0kb downstream 15596   true scaffold0071: 17492-33087 Medicago truncatula
Medtr0071s0030 2.0kb downstream 2.0kb downstream 2000   false scaffold0071: 31088-33087 Medicago truncatula
Medtr0071s0030 5.0kb upstream 5.0kb upstream 18596   true scaffold0071: 12492-31087 Medicago truncatula
Medtr0071s0030 5.0kb upstream 5.0kb upstream 5000   false scaffold0071: 12492-17491 Medicago truncatula
Medtr0071s0030 5.0kb downstream 5.0kb downstream 18596   true scaffold0071: 17492-36087 Medicago truncatula
Medtr0071s0030 5.0kb downstream 5.0kb downstream 5000   false scaffold0071: 31088-36087 Medicago truncatula
Medtr0071s0030 10.0kb upstream 10.0kb upstream 23596   true scaffold0071: 7492-31087 Medicago truncatula
Medtr0071s0030 10.0kb upstream 10.0kb upstream 10000   false scaffold0071: 7492-17491 Medicago truncatula
Medtr0071s0030 10.0kb downstream 10.0kb downstream 23596   true scaffold0071: 17492-41087 Medicago truncatula
Medtr0071s0030 10.0kb downstream 10.0kb downstream 10000   false scaffold0071: 31088-41087 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307893 5265 Fabidae View MSA
124062842 5270 Rosid View MSA
123745569 5271 Pentapetalae View MSA
122788117 5272 Eudicot View MSA
122043235 5273 Angiosperm View MSA
121346488 5274 Embryophyte View MSA
123426973 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.025     Low High
cufflinks 0.016     Low  
cufflinks 0.023     Low  
cufflinks 0.01     Low Low
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.017     Low  
cufflinks 0.017     Low  
cufflinks 0.022     Low  

0 Strain