Gene : Medtr8g083130 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR24015:SF884 - PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Description:  pentatricopeptide (PPR) repeat protein
Genomic Order:  4304 Name:  ? Medtr8g083130
Secondary Identifier:  ? PAC:31071646
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr8g083130 0.5kb upstream 0.5kb upstream 4685   true chr8: 35125426-35130110 Medicago truncatula
Medtr8g083130 0.5kb upstream 0.5kb upstream 500   false chr8: 35125426-35125925 Medicago truncatula
Medtr8g083130 0.5kb downstream 0.5kb downstream 4685   true chr8: 35125926-35130610 Medicago truncatula
Medtr8g083130 0.5kb downstream 0.5kb downstream 500   false chr8: 35130111-35130610 Medicago truncatula
Medtr8g083130 1.0kb upstream 1.0kb upstream 5185   true chr8: 35124926-35130110 Medicago truncatula
Medtr8g083130 1.0kb upstream 1.0kb upstream 1000   false chr8: 35124926-35125925 Medicago truncatula
Medtr8g083130 1.0kb downstream 1.0kb downstream 5185   true chr8: 35125926-35131110 Medicago truncatula
Medtr8g083130 1.0kb downstream 1.0kb downstream 1000   false chr8: 35130111-35131110 Medicago truncatula
Medtr8g083130 2.0kb upstream 2.0kb upstream 6185   true chr8: 35123926-35130110 Medicago truncatula
Medtr8g083130 2.0kb upstream 2.0kb upstream 2000   false chr8: 35123926-35125925 Medicago truncatula
Medtr8g083130 2.0kb downstream 2.0kb downstream 6185   true chr8: 35125926-35132110 Medicago truncatula
Medtr8g083130 2.0kb downstream 2.0kb downstream 2000   false chr8: 35130111-35132110 Medicago truncatula
Medtr8g083130 5.0kb upstream 5.0kb upstream 9185   true chr8: 35120926-35130110 Medicago truncatula
Medtr8g083130 5.0kb upstream 5.0kb upstream 5000   false chr8: 35120926-35125925 Medicago truncatula
Medtr8g083130 5.0kb downstream 5.0kb downstream 9185   true chr8: 35125926-35135110 Medicago truncatula
Medtr8g083130 5.0kb downstream 5.0kb downstream 5000   false chr8: 35130111-35135110 Medicago truncatula
Medtr8g083130 10.0kb upstream 10.0kb upstream 14185   true chr8: 35115926-35130110 Medicago truncatula
Medtr8g083130 10.0kb upstream 10.0kb upstream 10000   false chr8: 35115926-35125925 Medicago truncatula
Medtr8g083130 10.0kb downstream 10.0kb downstream 14185   true chr8: 35125926-35140110 Medicago truncatula
Medtr8g083130 10.0kb downstream 10.0kb downstream 10000   false chr8: 35130111-35140110 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.49        
cufflinks 0.177        
cufflinks 0.347        
cufflinks 0.023     Low Low
cufflinks 0.89       High
cufflinks 0.248        
cufflinks 0.18        
cufflinks 0.307        
cufflinks 0.109        

0 Strain