Gene : Medtr5g066840 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR16295 - TRAF-TYPE ZINC FINGER PROTEIN-RELATED Description:  TRAF-type zinc finger protein
Genomic Order:  3593 Name:  ? Medtr5g066840
Secondary Identifier:  ? PAC:31090964
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g066840 0.5kb upstream 0.5kb upstream 5554 true chr5: 28229391-28234944 Medicago truncatula
Medtr5g066840 0.5kb upstream 0.5kb upstream 500 false chr5: 28234445-28234944 Medicago truncatula
Medtr5g066840 0.5kb downstream 0.5kb downstream 5554 true chr5: 28228891-28234444 Medicago truncatula
Medtr5g066840 0.5kb downstream 0.5kb downstream 500 false chr5: 28228891-28229390 Medicago truncatula
Medtr5g066840 1.0kb upstream 1.0kb upstream 6054 true chr5: 28229391-28235444 Medicago truncatula
Medtr5g066840 1.0kb upstream 1.0kb upstream 1000 false chr5: 28234445-28235444 Medicago truncatula
Medtr5g066840 1.0kb downstream 1.0kb downstream 6054 true chr5: 28228391-28234444 Medicago truncatula
Medtr5g066840 1.0kb downstream 1.0kb downstream 1000 false chr5: 28228391-28229390 Medicago truncatula
Medtr5g066840 2.0kb upstream 2.0kb upstream 7054 true chr5: 28229391-28236444 Medicago truncatula
Medtr5g066840 2.0kb upstream 2.0kb upstream 2000 false chr5: 28234445-28236444 Medicago truncatula
Medtr5g066840 2.0kb downstream 2.0kb downstream 7054 true chr5: 28227391-28234444 Medicago truncatula
Medtr5g066840 2.0kb downstream 2.0kb downstream 2000 false chr5: 28227391-28229390 Medicago truncatula
Medtr5g066840 5.0kb upstream 5.0kb upstream 10054 true chr5: 28229391-28239444 Medicago truncatula
Medtr5g066840 5.0kb upstream 5.0kb upstream 5000 false chr5: 28234445-28239444 Medicago truncatula
Medtr5g066840 5.0kb downstream 5.0kb downstream 10054 true chr5: 28224391-28234444 Medicago truncatula
Medtr5g066840 5.0kb downstream 5.0kb downstream 5000 false chr5: 28224391-28229390 Medicago truncatula
Medtr5g066840 10.0kb upstream 10.0kb upstream 15054 true chr5: 28229391-28244444 Medicago truncatula
Medtr5g066840 10.0kb upstream 10.0kb upstream 10000 false chr5: 28234445-28244444 Medicago truncatula
Medtr5g066840 10.0kb downstream 10.0kb downstream 15054 true chr5: 28219391-28234444 Medicago truncatula
Medtr5g066840 10.0kb downstream 10.0kb downstream 10000 false chr5: 28219391-28229390 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311612 5265 Fabidae View MSA
124063211 5270 Rosid View MSA
123738829 5271 Pentapetalae View MSA
122787790 5272 Eudicot View MSA
122048290 5273 Angiosperm View MSA
121347686 5274 Embryophyte View MSA
123380601 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.351        
cufflinks 1.306        
cufflinks 1.238        
cufflinks 0.732       Low
cufflinks 1.407        
cufflinks 0.519       Low
cufflinks 1.089        
cufflinks 1.049        
cufflinks 0.925        

0 Strain