Gene : Medtr5g081810 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11709//PTHR11709:SF80 - MULTI-COPPER OXIDASE Description:  laccase/diphenol oxidase family protein
Genomic Order:  4534 Name:  ? Medtr5g081810
Secondary Identifier:  ? PAC:31085147
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-5466 Medicago truncatula pathologic  
Mtruncatula PWY-6824 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g081810 0.5kb upstream 0.5kb upstream 3589 true chr5: 35069184-35072772 Medicago truncatula
Medtr5g081810 0.5kb upstream 0.5kb upstream 500 false chr5: 35069184-35069683 Medicago truncatula
Medtr5g081810 0.5kb downstream 0.5kb downstream 3589 true chr5: 35069684-35073272 Medicago truncatula
Medtr5g081810 0.5kb downstream 0.5kb downstream 500 false chr5: 35072773-35073272 Medicago truncatula
Medtr5g081810 1.0kb upstream 1.0kb upstream 4089 true chr5: 35068684-35072772 Medicago truncatula
Medtr5g081810 1.0kb upstream 1.0kb upstream 1000 false chr5: 35068684-35069683 Medicago truncatula
Medtr5g081810 1.0kb downstream 1.0kb downstream 4089 true chr5: 35069684-35073772 Medicago truncatula
Medtr5g081810 1.0kb downstream 1.0kb downstream 1000 false chr5: 35072773-35073772 Medicago truncatula
Medtr5g081810 2.0kb upstream 2.0kb upstream 5089 true chr5: 35067684-35072772 Medicago truncatula
Medtr5g081810 2.0kb upstream 2.0kb upstream 2000 false chr5: 35067684-35069683 Medicago truncatula
Medtr5g081810 2.0kb downstream 2.0kb downstream 5089 true chr5: 35069684-35074772 Medicago truncatula
Medtr5g081810 2.0kb downstream 2.0kb downstream 2000 false chr5: 35072773-35074772 Medicago truncatula
Medtr5g081810 5.0kb upstream 5.0kb upstream 8089 true chr5: 35064684-35072772 Medicago truncatula
Medtr5g081810 5.0kb upstream 5.0kb upstream 5000 false chr5: 35064684-35069683 Medicago truncatula
Medtr5g081810 5.0kb downstream 5.0kb downstream 8089 true chr5: 35069684-35077772 Medicago truncatula
Medtr5g081810 5.0kb downstream 5.0kb downstream 5000 false chr5: 35072773-35077772 Medicago truncatula
Medtr5g081810 10.0kb upstream 10.0kb upstream 13089 true chr5: 35059684-35072772 Medicago truncatula
Medtr5g081810 10.0kb upstream 10.0kb upstream 10000 false chr5: 35059684-35069683 Medicago truncatula
Medtr5g081810 10.0kb downstream 10.0kb downstream 13089 true chr5: 35069684-35082772 Medicago truncatula
Medtr5g081810 10.0kb downstream 10.0kb downstream 10000 false chr5: 35072773-35082772 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121779717 5273 Angiosperm View MSA
122304068 5265 Fabidae View MSA
124070050 5270 Rosid View MSA
123743966 5271 Pentapetalae View MSA
122770838 5272 Eudicot View MSA
121051361 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.243        
cufflinks 0.625        
cufflinks 1.31        
cufflinks 4.549       High
cufflinks 0.321       Low
cufflinks 0.427       Low
cufflinks 1.695        
cufflinks 1.392        

0 Strain