Gene : Medtr5g007330 M. truncatula Mt4.0v1
Defline:  (1 of 2) 2.5.1.87 - Ditrans,polycis-polyprenyl diphosphate synthase ((2E,6E)-farnesyl diphosphate specific) / Rer2p Z-prenyltransferase Description:  undecaprenyl pyrophosphate synthetase family protein, putative
Genomic Order:  203 Name:  ? Medtr5g007330
Secondary Identifier:  ? PAC:31089292
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6129 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g007330 0.5kb upstream 0.5kb upstream 4552 true chr5: 1290410-1294961 Medicago truncatula
Medtr5g007330 0.5kb upstream 0.5kb upstream 500 false chr5: 1290410-1290909 Medicago truncatula
Medtr5g007330 0.5kb downstream 0.5kb downstream 4552 true chr5: 1290910-1295461 Medicago truncatula
Medtr5g007330 0.5kb downstream 0.5kb downstream 500 false chr5: 1294962-1295461 Medicago truncatula
Medtr5g007330 1.0kb upstream 1.0kb upstream 5052 true chr5: 1289910-1294961 Medicago truncatula
Medtr5g007330 1.0kb upstream 1.0kb upstream 1000 false chr5: 1289910-1290909 Medicago truncatula
Medtr5g007330 1.0kb downstream 1.0kb downstream 5052 true chr5: 1290910-1295961 Medicago truncatula
Medtr5g007330 1.0kb downstream 1.0kb downstream 1000 false chr5: 1294962-1295961 Medicago truncatula
Medtr5g007330 2.0kb upstream 2.0kb upstream 6052 true chr5: 1288910-1294961 Medicago truncatula
Medtr5g007330 2.0kb upstream 2.0kb upstream 2000 false chr5: 1288910-1290909 Medicago truncatula
Medtr5g007330 2.0kb downstream 2.0kb downstream 6052 true chr5: 1290910-1296961 Medicago truncatula
Medtr5g007330 2.0kb downstream 2.0kb downstream 2000 false chr5: 1294962-1296961 Medicago truncatula
Medtr5g007330 5.0kb upstream 5.0kb upstream 9052 true chr5: 1285910-1294961 Medicago truncatula
Medtr5g007330 5.0kb upstream 5.0kb upstream 5000 false chr5: 1285910-1290909 Medicago truncatula
Medtr5g007330 5.0kb downstream 5.0kb downstream 9052 true chr5: 1290910-1299961 Medicago truncatula
Medtr5g007330 5.0kb downstream 5.0kb downstream 5000 false chr5: 1294962-1299961 Medicago truncatula
Medtr5g007330 10.0kb upstream 10.0kb upstream 14052 true chr5: 1280910-1294961 Medicago truncatula
Medtr5g007330 10.0kb upstream 10.0kb upstream 10000 false chr5: 1280910-1290909 Medicago truncatula
Medtr5g007330 10.0kb downstream 10.0kb downstream 14052 true chr5: 1290910-1304961 Medicago truncatula
Medtr5g007330 10.0kb downstream 10.0kb downstream 10000 false chr5: 1294962-1304961 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122264316 5265 Fabidae Singleton cluster - no MSA
124005423 5270 Rosid Singleton cluster - no MSA
123744162 5271 Pentapetalae View MSA
122791831 5272 Eudicot View MSA
122045568 5273 Angiosperm View MSA
121310466 5274 Embryophyte View MSA
123347940 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.074        
cufflinks 0.899        
cufflinks 1.452       High
cufflinks 0.615       Low
cufflinks 1.044        
cufflinks 0.897        
cufflinks 1.35       High
cufflinks 1.117        
cufflinks 0.532       Low

0 Strain