Gene : Medtr5g017200 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR22950//PTHR22950:SF310 - AMINO ACID TRANSPORTER Description:  transmembrane amino acid transporter family protein
Genomic Order:  917 Name:  ? Medtr5g017200
Secondary Identifier:  ? PAC:31088545
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g017200 0.5kb upstream 0.5kb upstream 2462 true chr5: 6248397-6250858 Medicago truncatula
Medtr5g017200 0.5kb upstream 0.5kb upstream 500 false chr5: 6248397-6248896 Medicago truncatula
Medtr5g017200 0.5kb downstream 0.5kb downstream 2462 true chr5: 6248897-6251358 Medicago truncatula
Medtr5g017200 0.5kb downstream 0.5kb downstream 500 false chr5: 6250859-6251358 Medicago truncatula
Medtr5g017200 1.0kb upstream 1.0kb upstream 2962 true chr5: 6247897-6250858 Medicago truncatula
Medtr5g017200 1.0kb upstream 1.0kb upstream 1000 false chr5: 6247897-6248896 Medicago truncatula
Medtr5g017200 1.0kb downstream 1.0kb downstream 2962 true chr5: 6248897-6251858 Medicago truncatula
Medtr5g017200 1.0kb downstream 1.0kb downstream 1000 false chr5: 6250859-6251858 Medicago truncatula
Medtr5g017200 2.0kb upstream 2.0kb upstream 3962 true chr5: 6246897-6250858 Medicago truncatula
Medtr5g017200 2.0kb upstream 2.0kb upstream 2000 false chr5: 6246897-6248896 Medicago truncatula
Medtr5g017200 2.0kb downstream 2.0kb downstream 3962 true chr5: 6248897-6252858 Medicago truncatula
Medtr5g017200 2.0kb downstream 2.0kb downstream 2000 false chr5: 6250859-6252858 Medicago truncatula
Medtr5g017200 5.0kb upstream 5.0kb upstream 6962 true chr5: 6243897-6250858 Medicago truncatula
Medtr5g017200 5.0kb upstream 5.0kb upstream 5000 false chr5: 6243897-6248896 Medicago truncatula
Medtr5g017200 5.0kb downstream 5.0kb downstream 6962 true chr5: 6248897-6255858 Medicago truncatula
Medtr5g017200 5.0kb downstream 5.0kb downstream 5000 false chr5: 6250859-6255858 Medicago truncatula
Medtr5g017200 10.0kb upstream 10.0kb upstream 11962 true chr5: 6238897-6250858 Medicago truncatula
Medtr5g017200 10.0kb upstream 10.0kb upstream 10000 false chr5: 6238897-6248896 Medicago truncatula
Medtr5g017200 10.0kb downstream 10.0kb downstream 11962 true chr5: 6248897-6260858 Medicago truncatula
Medtr5g017200 10.0kb downstream 10.0kb downstream 10000 false chr5: 6250859-6260858 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296929 5265 Fabidae View MSA
124074784 5270 Rosid View MSA
123745911 5271 Pentapetalae View MSA
122771696 5272 Eudicot View MSA
122050905 5273 Angiosperm View MSA
121349854 5274 Embryophyte View MSA
123381472 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.086        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  

0 Strain