Gene : Medtr5g022000 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11139:SF1 - TRANSFORMATION/TRANSCRIPTION DOMAIN-ASSOCIATED PROTEIN Description:  transformation/transcription domain associated protein
Genomic Order:  1238 Name:  ? Medtr5g022000
Secondary Identifier:  ? PAC:31091781
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g022000 0.5kb upstream 0.5kb upstream 27988 true chr5: 8590353-8618340 Medicago truncatula
Medtr5g022000 0.5kb upstream 0.5kb upstream 500 false chr5: 8590353-8590852 Medicago truncatula
Medtr5g022000 0.5kb downstream 0.5kb downstream 27988 true chr5: 8590853-8618840 Medicago truncatula
Medtr5g022000 0.5kb downstream 0.5kb downstream 500 false chr5: 8618341-8618840 Medicago truncatula
Medtr5g022000 1.0kb upstream 1.0kb upstream 28488 true chr5: 8589853-8618340 Medicago truncatula
Medtr5g022000 1.0kb upstream 1.0kb upstream 1000 false chr5: 8589853-8590852 Medicago truncatula
Medtr5g022000 1.0kb downstream 1.0kb downstream 28488 true chr5: 8590853-8619340 Medicago truncatula
Medtr5g022000 1.0kb downstream 1.0kb downstream 1000 false chr5: 8618341-8619340 Medicago truncatula
Medtr5g022000 2.0kb upstream 2.0kb upstream 29488 true chr5: 8588853-8618340 Medicago truncatula
Medtr5g022000 2.0kb upstream 2.0kb upstream 2000 false chr5: 8588853-8590852 Medicago truncatula
Medtr5g022000 2.0kb downstream 2.0kb downstream 29488 true chr5: 8590853-8620340 Medicago truncatula
Medtr5g022000 2.0kb downstream 2.0kb downstream 2000 false chr5: 8618341-8620340 Medicago truncatula
Medtr5g022000 5.0kb upstream 5.0kb upstream 32488 true chr5: 8585853-8618340 Medicago truncatula
Medtr5g022000 5.0kb upstream 5.0kb upstream 5000 false chr5: 8585853-8590852 Medicago truncatula
Medtr5g022000 5.0kb downstream 5.0kb downstream 32488 true chr5: 8590853-8623340 Medicago truncatula
Medtr5g022000 5.0kb downstream 5.0kb downstream 5000 false chr5: 8618341-8623340 Medicago truncatula
Medtr5g022000 10.0kb upstream 10.0kb upstream 37488 true chr5: 8580853-8618340 Medicago truncatula
Medtr5g022000 10.0kb upstream 10.0kb upstream 10000 false chr5: 8580853-8590852 Medicago truncatula
Medtr5g022000 10.0kb downstream 10.0kb downstream 37488 true chr5: 8590853-8628340 Medicago truncatula
Medtr5g022000 10.0kb downstream 10.0kb downstream 10000 false chr5: 8618341-8628340 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122027431 5273 Angiosperm View MSA
122300725 5265 Fabidae View MSA
124067016 5270 Rosid View MSA
123737923 5271 Pentapetalae View MSA
122791578 5272 Eudicot View MSA
121344769 5274 Embryophyte View MSA
123424018 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.684        
cufflinks 4.136        
cufflinks 3.886        
cufflinks 0.854       Low
cufflinks 7.217       High
cufflinks 0.705       Low
cufflinks 1.992        
cufflinks 3.528        
cufflinks 1.673        

0 Strain