Gene : Medtr4g127800 M. truncatula Mt4.0v1
Defline:  (1 of 1) 2.5.1.115 - Homogentisate phytyltransferase / HPT Description:  homogentisate phytyltransferase
Genomic Order:  6809 Name:  ? Medtr4g127800
Secondary Identifier:  ? PAC:31114477
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-1422 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g127800 0.5kb upstream 0.5kb upstream 8346 true chr4: 53131266-53139611 Medicago truncatula
Medtr4g127800 0.5kb upstream 0.5kb upstream 500 false chr4: 53139112-53139611 Medicago truncatula
Medtr4g127800 0.5kb downstream 0.5kb downstream 8346 true chr4: 53130766-53139111 Medicago truncatula
Medtr4g127800 0.5kb downstream 0.5kb downstream 500 false chr4: 53130766-53131265 Medicago truncatula
Medtr4g127800 1.0kb upstream 1.0kb upstream 8846 true chr4: 53131266-53140111 Medicago truncatula
Medtr4g127800 1.0kb upstream 1.0kb upstream 1000 false chr4: 53139112-53140111 Medicago truncatula
Medtr4g127800 1.0kb downstream 1.0kb downstream 8846 true chr4: 53130266-53139111 Medicago truncatula
Medtr4g127800 1.0kb downstream 1.0kb downstream 1000 false chr4: 53130266-53131265 Medicago truncatula
Medtr4g127800 2.0kb upstream 2.0kb upstream 9846 true chr4: 53131266-53141111 Medicago truncatula
Medtr4g127800 2.0kb upstream 2.0kb upstream 2000 false chr4: 53139112-53141111 Medicago truncatula
Medtr4g127800 2.0kb downstream 2.0kb downstream 9846 true chr4: 53129266-53139111 Medicago truncatula
Medtr4g127800 2.0kb downstream 2.0kb downstream 2000 false chr4: 53129266-53131265 Medicago truncatula
Medtr4g127800 5.0kb upstream 5.0kb upstream 12846 true chr4: 53131266-53144111 Medicago truncatula
Medtr4g127800 5.0kb upstream 5.0kb upstream 5000 false chr4: 53139112-53144111 Medicago truncatula
Medtr4g127800 5.0kb downstream 5.0kb downstream 12846 true chr4: 53126266-53139111 Medicago truncatula
Medtr4g127800 5.0kb downstream 5.0kb downstream 5000 false chr4: 53126266-53131265 Medicago truncatula
Medtr4g127800 10.0kb upstream 10.0kb upstream 17846 true chr4: 53131266-53149111 Medicago truncatula
Medtr4g127800 10.0kb upstream 10.0kb upstream 10000 false chr4: 53139112-53149111 Medicago truncatula
Medtr4g127800 10.0kb downstream 10.0kb downstream 17846 true chr4: 53121266-53139111 Medicago truncatula
Medtr4g127800 10.0kb downstream 10.0kb downstream 10000 false chr4: 53121266-53131265 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305638 5265 Fabidae View MSA
124061099 5270 Rosid View MSA
123745017 5271 Pentapetalae View MSA
122786578 5272 Eudicot View MSA
122051505 5273 Angiosperm View MSA
121349227 5274 Embryophyte View MSA
123426888 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.065        
cufflinks 0.52       High
cufflinks 0.246        
cufflinks 0.117        
cufflinks 0.485       High
cufflinks 0.029     Low Low
cufflinks 0.117        
cufflinks 0.32        
cufflinks 0.09     Low  

0 Strain