Gene : Medtr4g090890 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR12937 - VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 Description:  vacuolar protein sorting-associated protein VPS28, putative
Genomic Order:  4538 Name:  ? Medtr4g090890
Secondary Identifier:  ? PAC:31114529
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g090890 0.5kb upstream 0.5kb upstream 2567 true chr4: 35949516-35952082 Medicago truncatula
Medtr4g090890 0.5kb upstream 0.5kb upstream 500 false chr4: 35949516-35950015 Medicago truncatula
Medtr4g090890 0.5kb downstream 0.5kb downstream 2567 true chr4: 35950016-35952582 Medicago truncatula
Medtr4g090890 0.5kb downstream 0.5kb downstream 500 false chr4: 35952083-35952582 Medicago truncatula
Medtr4g090890 1.0kb upstream 1.0kb upstream 3067 true chr4: 35949016-35952082 Medicago truncatula
Medtr4g090890 1.0kb upstream 1.0kb upstream 1000 false chr4: 35949016-35950015 Medicago truncatula
Medtr4g090890 1.0kb downstream 1.0kb downstream 3067 true chr4: 35950016-35953082 Medicago truncatula
Medtr4g090890 1.0kb downstream 1.0kb downstream 1000 false chr4: 35952083-35953082 Medicago truncatula
Medtr4g090890 2.0kb upstream 2.0kb upstream 4067 true chr4: 35948016-35952082 Medicago truncatula
Medtr4g090890 2.0kb upstream 2.0kb upstream 2000 false chr4: 35948016-35950015 Medicago truncatula
Medtr4g090890 2.0kb downstream 2.0kb downstream 4067 true chr4: 35950016-35954082 Medicago truncatula
Medtr4g090890 2.0kb downstream 2.0kb downstream 2000 false chr4: 35952083-35954082 Medicago truncatula
Medtr4g090890 5.0kb upstream 5.0kb upstream 7067 true chr4: 35945016-35952082 Medicago truncatula
Medtr4g090890 5.0kb upstream 5.0kb upstream 5000 false chr4: 35945016-35950015 Medicago truncatula
Medtr4g090890 5.0kb downstream 5.0kb downstream 7067 true chr4: 35950016-35957082 Medicago truncatula
Medtr4g090890 5.0kb downstream 5.0kb downstream 5000 false chr4: 35952083-35957082 Medicago truncatula
Medtr4g090890 10.0kb upstream 10.0kb upstream 12067 true chr4: 35940016-35952082 Medicago truncatula
Medtr4g090890 10.0kb upstream 10.0kb upstream 10000 false chr4: 35940016-35950015 Medicago truncatula
Medtr4g090890 10.0kb downstream 10.0kb downstream 12067 true chr4: 35950016-35962082 Medicago truncatula
Medtr4g090890 10.0kb downstream 10.0kb downstream 10000 false chr4: 35952083-35962082 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299464 5265 Fabidae View MSA
124064645 5270 Rosid View MSA
123751452 5271 Pentapetalae View MSA
122791006 5272 Eudicot View MSA
122044389 5273 Angiosperm View MSA
121350792 5274 Embryophyte View MSA
123425897 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.713     High  
cufflinks 11.238     High Low
cufflinks 18.129     High  
cufflinks 48.137     High High
cufflinks 13.015     High  
cufflinks 15.183     High  
cufflinks 30.646     High  
cufflinks 13.602     High  
cufflinks 36.843     High High

0 Strain