Gene : Medtr3g108790 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR10410:SF6 - COP9 SIGNALOSOME COMPLEX SUBUNIT 5 Description:  COP9 signalosome complex subunit 5
Genomic Order:  6052 Name:  ? Medtr3g108790
Secondary Identifier:  ? PAC:31057693
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g108790 0.5kb upstream 0.5kb upstream 3472 true chr3: 50261607-50265078 Medicago truncatula
Medtr3g108790 0.5kb upstream 0.5kb upstream 500 false chr3: 50261607-50262106 Medicago truncatula
Medtr3g108790 0.5kb downstream 0.5kb downstream 3472 true chr3: 50262107-50265578 Medicago truncatula
Medtr3g108790 0.5kb downstream 0.5kb downstream 500 false chr3: 50265079-50265578 Medicago truncatula
Medtr3g108790 1.0kb upstream 1.0kb upstream 3972 true chr3: 50261107-50265078 Medicago truncatula
Medtr3g108790 1.0kb upstream 1.0kb upstream 1000 false chr3: 50261107-50262106 Medicago truncatula
Medtr3g108790 1.0kb downstream 1.0kb downstream 3972 true chr3: 50262107-50266078 Medicago truncatula
Medtr3g108790 1.0kb downstream 1.0kb downstream 1000 false chr3: 50265079-50266078 Medicago truncatula
Medtr3g108790 2.0kb upstream 2.0kb upstream 4972 true chr3: 50260107-50265078 Medicago truncatula
Medtr3g108790 2.0kb upstream 2.0kb upstream 2000 false chr3: 50260107-50262106 Medicago truncatula
Medtr3g108790 2.0kb downstream 2.0kb downstream 4972 true chr3: 50262107-50267078 Medicago truncatula
Medtr3g108790 2.0kb downstream 2.0kb downstream 2000 false chr3: 50265079-50267078 Medicago truncatula
Medtr3g108790 5.0kb upstream 5.0kb upstream 7972 true chr3: 50257107-50265078 Medicago truncatula
Medtr3g108790 5.0kb upstream 5.0kb upstream 5000 false chr3: 50257107-50262106 Medicago truncatula
Medtr3g108790 5.0kb downstream 5.0kb downstream 7972 true chr3: 50262107-50270078 Medicago truncatula
Medtr3g108790 5.0kb downstream 5.0kb downstream 5000 false chr3: 50265079-50270078 Medicago truncatula
Medtr3g108790 10.0kb upstream 10.0kb upstream 12972 true chr3: 50252107-50265078 Medicago truncatula
Medtr3g108790 10.0kb upstream 10.0kb upstream 10000 false chr3: 50252107-50262106 Medicago truncatula
Medtr3g108790 10.0kb downstream 10.0kb downstream 12972 true chr3: 50262107-50275078 Medicago truncatula
Medtr3g108790 10.0kb downstream 10.0kb downstream 10000 false chr3: 50265079-50275078 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299162 5265 Fabidae View MSA
124062385 5270 Rosid View MSA
123748125 5271 Pentapetalae View MSA
122791639 5272 Eudicot View MSA
122043693 5273 Angiosperm View MSA
121347496 5274 Embryophyte View MSA
123424807 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.779     High  
cufflinks 24.886     High  
cufflinks 24.291     High  
cufflinks 13.795     High  
cufflinks 22.713     High  
cufflinks 6.084       Low
cufflinks 20.917     High  
cufflinks 24.349     High  
cufflinks 18.567     High  

0 Strain