Gene : Medtr3g111440 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR16295 - TRAF-TYPE ZINC FINGER PROTEIN-RELATED Description:  TRAF-type zinc finger protein
Genomic Order:  6299 Name:  ? Medtr3g111440
Secondary Identifier:  ? PAC:31057186
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr3g111440 0.5kb upstream 0.5kb upstream 4005 true chr3: 52076347-52080351 Medicago truncatula
Medtr3g111440 0.5kb upstream 0.5kb upstream 500 false chr3: 52079852-52080351 Medicago truncatula
Medtr3g111440 0.5kb downstream 0.5kb downstream 4005 true chr3: 52075847-52079851 Medicago truncatula
Medtr3g111440 0.5kb downstream 0.5kb downstream 500 false chr3: 52075847-52076346 Medicago truncatula
Medtr3g111440 1.0kb upstream 1.0kb upstream 4505 true chr3: 52076347-52080851 Medicago truncatula
Medtr3g111440 1.0kb upstream 1.0kb upstream 1000 false chr3: 52079852-52080851 Medicago truncatula
Medtr3g111440 1.0kb downstream 1.0kb downstream 4505 true chr3: 52075347-52079851 Medicago truncatula
Medtr3g111440 1.0kb downstream 1.0kb downstream 1000 false chr3: 52075347-52076346 Medicago truncatula
Medtr3g111440 2.0kb upstream 2.0kb upstream 5505 true chr3: 52076347-52081851 Medicago truncatula
Medtr3g111440 2.0kb upstream 2.0kb upstream 2000 false chr3: 52079852-52081851 Medicago truncatula
Medtr3g111440 2.0kb downstream 2.0kb downstream 5505 true chr3: 52074347-52079851 Medicago truncatula
Medtr3g111440 2.0kb downstream 2.0kb downstream 2000 false chr3: 52074347-52076346 Medicago truncatula
Medtr3g111440 5.0kb upstream 5.0kb upstream 8505 true chr3: 52076347-52084851 Medicago truncatula
Medtr3g111440 5.0kb upstream 5.0kb upstream 5000 false chr3: 52079852-52084851 Medicago truncatula
Medtr3g111440 5.0kb downstream 5.0kb downstream 8505 true chr3: 52071347-52079851 Medicago truncatula
Medtr3g111440 5.0kb downstream 5.0kb downstream 5000 false chr3: 52071347-52076346 Medicago truncatula
Medtr3g111440 10.0kb upstream 10.0kb upstream 13505 true chr3: 52076347-52089851 Medicago truncatula
Medtr3g111440 10.0kb upstream 10.0kb upstream 10000 false chr3: 52079852-52089851 Medicago truncatula
Medtr3g111440 10.0kb downstream 10.0kb downstream 13505 true chr3: 52066347-52079851 Medicago truncatula
Medtr3g111440 10.0kb downstream 10.0kb downstream 10000 false chr3: 52066347-52076346 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311612 5265 Fabidae View MSA
124063211 5270 Rosid View MSA
123738829 5271 Pentapetalae View MSA
122787790 5272 Eudicot View MSA
122048290 5273 Angiosperm View MSA
121347686 5274 Embryophyte View MSA
123380601 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.867       High
cufflinks 0.683        
cufflinks 0.621        
cufflinks 0.637        
cufflinks 0.704        
cufflinks 0.387       Low
cufflinks 0.602        
cufflinks 0.565        
cufflinks 0.587        

0 Strain